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AT2G42680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : multiprotein bridging factor 1A
Curator
Summary (TAIR10)
One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.
Computational
Description (TAIR10)
multiprotein bridging factor 1A (MBF1A); CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: multiprotein bridging factor 1B (TAIR:AT3G58680.1); Has 672 Blast hits to 672 proteins in 252 species: Archae - 42; Bacteria - 8; Metazoa - 193; Fungi - 147; Plants - 135; Viruses - 2; Other Eukaryotes - 145 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1813eggNOG:KOG3398EMBL:AC006931EMBL:AC007087
EMBL:AF370280EMBL:AY063014EMBL:AY088140EMBL:CP002685
EnsemblPlants:AT2G42680EnsemblPlants:AT2G42680.1entrez:818868Gene3D:1.10.260.40
GeneID:818868Genevisible:Q9SJI8GO:GO:0003713GO:GO:0005730
GO:GO:0006351GO:GO:0043565GO:GO:0045893Gramene:AT2G42680.1
hmmpanther:PTHR10245hmmpanther:PTHR10245:SF23HOGENOM:HOG000195726InParanoid:Q9SJI8
InterPro:IPR001387InterPro:IPR010982InterPro:IPR013729iPTMnet:Q9SJI8
KEGG:ath:AT2G42680KO:K03627OMA:PQIINEYPaxDb:Q9SJI8
Pfam:PF01381Pfam:PF08523Pfam:Q9SJI8Pfscan:PS50943
PhylomeDB:Q9SJI8PIR:H84856PRIDE:Q9SJI8PRO:PR:Q9SJI8
PROSITE:PS50943ProteinModelPortal:Q9SJI8Proteomes:UP000006548RefSeq:NP_565981.1
SMART:SM00530SMR:Q9SJI8STRING:3702.AT2G42680.1SUPFAM:SSF47413
TAIR:AT2G42680tair10-symbols:ATMBF1Atair10-symbols:MBF1AUniGene:At.14148
UniGene:At.24758UniProt:Q9SJI8
Coordinates (TAIR10) chr2:+:17774972..17776116
Molecular Weight (calculated) 15620.80 Da
IEP (calculated) 10.66
GRAVY (calculated) -0.77
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)