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AT2G42120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA polymerase delta small subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA polymerase delta small subunit (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1311eggNOG:KOG2732EMBL:CP002685EnsemblPlants:AT2G42120
EnsemblPlants:AT2G42120.1entrez:818812ExpressionAtlas:F4IM00GeneID:818812
GO:GO:0003677GO:GO:0003887GO:GO:0006260Gramene:AT2G42120.1
hmmpanther:PTHR10416hmmpanther:PTHR10416:SF0InterPro:IPR007185InterPro:IPR024826
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7KEGG:ath:AT2G42120KO:K02328
OMA:TRLIQMRPANTHER:PTHR10416PaxDb:F4IM00Pfam:PF04042
PRIDE:F4IM00ProteinModelPortal:F4IM00Proteomes:UP000006548RefSeq:NP_181742.2
SMR:F4IM00STRING:3702.AT2G42120.1TAIR:AT2G42120tair10-symbols:POLD2
UniGene:At.42746UniProt:F4IM00
Coordinates (TAIR10) chr2:-:17563282..17565965
Molecular Weight (calculated) 49541.40 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.26
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIDSEKIHE RKQSDYNSLQ DERFEIQKEM YRGQQYSQIY FARLHLMRTL LYSLAPTWKS HLPVCKVLGL EKGKECIIVG TLFKHMKLKP CVLDEYSKER
101: SVTPLVKPHN FMHPDDNLIL EDESGRVKLA GSALSPAIYV TGVVVALHGK ETNAGEFFVE DVLEAGLPPQ IERPIDLQED KYVVLLSGLC IGSKSANPLQ
201: FQLLVDHITG HLGDEEEQGL AAQIVHVVIA GNSFEFPRKL INGQNLASKD QSTLYEPIKE LDIMLSQIAA GVSVDIMPGT NDPANFALPQ QPLNRCLFPG
301: SSPYNTFRSC TNPHSFDVDN IRFLGTSGQN IDDLGKYSEA KSKLDFVERT LRWRHLAPTA PNTLGCYPFT DRDPFLIETC PHVYFVGNQD KYDNRLIKGS
401: EGQLVRLICI PKFCETGIAV AVNLRNLECH TLSFSTQINQ S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)