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AT2G41830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterized protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterized protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT5G21080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YJSKeggNOG:KOG1877EMBL:CP002685EnsemblPlants:AT2G41830
EnsemblPlants:AT2G41830.1entrez:818782Gene3D:1.25.10.10GeneID:818782
GO:GO:0005886Gramene:AT2G41830.1hmmpanther:PTHR12444hmmpanther:PTHR12444:SF0
InParanoid:F4ILW4InterPro:IPR011989InterPro:IPR016024iPTMnet:F4ILW4
KEGG:ath:AT2G41830OMA:DKCLVQLPaxDb:F4ILW4PRIDE:F4ILW4
ProteinModelPortal:F4ILW4Proteomes:UP000006548RefSeq:NP_181714.3STRING:3702.AT2G41830.1
SUPFAM:SSF48371TAIR:AT2G41830UniGene:At.43552UniProt:F4ILW4
Coordinates (TAIR10) chr2:-:17450431..17456453
Molecular Weight (calculated) 114342.00 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.22
Length 1025 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSAVSGVISR QVLPVCGSLC ILCPALRARS RQPVKRYKKL IAEIFPRNQE EGINDRKIGK LCEYAAKNAV RMPKISDSLE HRCYKELRNE NFHSAKIAMC
0101: IYRRLLVTCK EQIPLFSSGF LRTVQALLDQ TRQDEMQIVG CQSLFEFVIN QKDGSSLFNL EGFLPKLCQL GLEGGDDDRS RSLRAAGLQA LSAMIWLMGE
0201: YSHIPSEFDN VVSAVLENYG HPKILTNAND SGRKWVDEVL KNEGHVAYED SLINVPSWRT VVNDKGELNV KMEDSLDPSF WSKVCLHNMA KLGEEATTMR
0301: RILESLFRNF DEGCLWSTEN SIAFPVLRDL QFLMEISGQR THFLLSMLIK HLDHKSVLKH PSMQLNILEV TSSLSETAKV EHSATIVSAI SDIMRHLRKC
0401: MHSSLDEANL GTDAANCIRM VSVAVDKCLV QLTKKVGDAG PILDAMALML ENISAVTDVA RTTIAAVFRT AQIIASIPNL QYQNKAFPEA LFHQLLQAMV
0501: HPDHKTRIGA HRIFSVVLVP TSVCPRPSST TTDLKKGMGL PRSLSRTASV FSSSAALFEK LKKDKFSSML TSDHSQNGMP EEERGSSTGE ILDRLKSSYR
0601: QAYSTWNQPL TSVVDNSVDL LNSELDVVHI RLSSHQIGLL LSSIWAQSIS PANTPDNYEA IANTYSLVLL FSRVKNSSHD ALIRSFQMAL SLRDISLMEG
0701: GPLPPSRRRS LFTLAASMVL FSSKAFNLFS LADFTKVTLQ GPRLDPFLNL VDDHKLKAVN SDQLKVAYGC EKDDASALDT LSNIALSTEH SRGTLVYEIV
0801: KSLEDMCNSE MDKMREQLLT EFMPDDACPL GTRFLEDTHK TYQIDSGDVK PRKEDAEDQE FGDGTETVTK NNHVTFSEIP DLLTVNQILE SVVETTRQVG
0901: RISFHTAADA SYKEMTLHCE NLLMGKQQKI SSLLNSQLRH ESSVNCSPRQ HDEEIKIASF HPMINSAFHT GVEVPLLSKE FDMKSPRTPV GTIQSPCYAE
1001: LQNNPQAFRL PASSPYDNFL KAAGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)