suba logo
AT2G35700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ERF family protein 38
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.
Computational
Description (TAIR10)
ERF family protein 38 (ERF38); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G16750.1); Has 5850 Blast hits to 5685 proteins in 248 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5840; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:3484eggNOG:ENOG410JESFeggNOG:ENOG410YRMBEMBL:AC006068
EMBL:AY560845EMBL:BT025754EMBL:CP002685EMBL:DQ446600
EMBL:DQ653042EnsemblPlants:AT2G35700EnsemblPlants:AT2G35700.1entrez:818139
Gene3D:3.30.730.10GeneID:818139Genevisible:Q9ZQP3GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009834
GO:GO:0009873Gramene:AT2G35700.1hmmpanther:PTHR31985hmmpanther:PTHR31985:SF41
HOGENOM:HOG000237624InParanoid:Q9ZQP3InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT2G35700OMA:HNIDGFWPaxDb:Q9ZQP3Pfam:PF00847
Pfam:Q9ZQP3Pfscan:PS51032PhylomeDB:Q9ZQP3PIR:H84771
PRINTS:PR00367PRO:PR:Q9ZQP3PROSITE:PS51032ProteinModelPortal:Q9ZQP3
Proteomes:UP000006548RefSeq:NP_181113.1SMART:SM00380SMR:Q9ZQP3
STRING:3702.AT2G35700.1SUPFAM:SSF54171TAIR:AT2G35700tair10-symbols:ATERF38
tair10-symbols:ERF38UniGene:At.50671UniProt:Q9ZQP3
Coordinates (TAIR10) chr2:+:15005205..15005789
Molecular Weight (calculated) 21618.30 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.64
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MERDDCRRFQ DSPAQTTERR VKYKPKKKRA KDDDDEKVVS KHPNFRGVRM RQWGKWVSEI REPKKKSRIW LGTFSTAEMA ARAHDVAALA IKGGSAHLNF
101: PELAYHLPRP ASADPKDIQA AAAAAAAAVA IDMDVETSSP SPSPTVTETS SPAMIALSDD AFSDLPDLLL NVNHNIDGFW DSFPYEEPFL SQSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)