suba logo
AT2G35650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cellulose synthase like
Curator
Summary (TAIR10)
a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.
Computational
Description (TAIR10)
cellulose synthase like (CSLA07); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT5G03760.1); Has 5575 Blast hits to 5571 proteins in 1570 species: Archae - 229; Bacteria - 4378; Metazoa - 38; Fungi - 87; Plants - 496; Viruses - 11; Other Eukaryotes - 336 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G35650-MONOMERCAZy:GT2EC:2.4.1.-eggNOG:COG1215
eggNOG:ENOG410IKNSEMBL:AC006068EMBL:AJ488284EMBL:AY059724
EMBL:AY084607EMBL:AY133807EMBL:CP002685EnsemblPlants:AT2G35650
EnsemblPlants:AT2G35650.1entrez:818134ExpressionAtlas:Q9ZQN8Gene3D:3.90.550.10
GeneID:818134Genevisible:Q9ZQN8GO:GO:0000139GO:GO:0016021
GO:GO:0016740GO:GO:0051753GO:GO:0071555GO:GO:0097502
Gramene:AT2G35650.1hmmpanther:PTHR32044hmmpanther:PTHR32044:SF21HOGENOM:HOG000238309
InParanoid:Q9ZQN8InterPro:IPR029044KEGG:ath:AT2G35650OMA:YLEQWIS
PaxDb:Q9ZQN8Pfam:PF13641Pfam:Q9ZQN8PhylomeDB:Q9ZQN8
PhylomeDB:W8PUY9PIR:C84771PRIDE:Q9ZQN8PRO:PR:Q9ZQN8
ProteinModelPortal:Q9ZQN8Proteomes:UP000006548RefSeq:NP_565813.1SMR:Q9ZQN8
STRING:3702.AT2G35650.1SUPFAM:SSF53448TAIR:AT2G35650tair10-symbols:ATCSLA07
tair10-symbols:ATCSLA7tair10-symbols:CSLA07tair10-symbols:CSLA7TMHMM:TMhelix
UniGene:At.13448UniGene:At.26642UniProt:Q9ZQN8UniProt:W8PUY9
Coordinates (TAIR10) chr2:+:14985625..14988187
Molecular Weight (calculated) 63798.50 Da
IEP (calculated) 9.01
GRAVY (calculated) 0.26
Length 556 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPLPIFHRL PHATFSSFLL SLSQAGSSKT SVAFLNAFKS EDIIARIGLW WQLIRAVVVV PVFKFLVLLC LVMSVMFFVE VMYMGIVVLY VKLFKRKPEK
101: FYKWEAMEDD VECGSASYPM VLVQIPMYNE KEVCEQSIAA ACKISWPSNR IIIQVLDDST DPASKELVKK ECDRWSKEGV NITFEIRDNR NGYKAGALRE
201: GMRHSYVKQC DYVAIFDADF QPDPDFLHRT VPFLIHNPKL ALVQGRWEFV NAGQCMMTRL QEMSLSYHFT IEQQVGSSTF AFFGFNGTAG VWRISALNES
301: GGWNDQTTVE DMDLAVRATL RGWKFLYIDD LKVKSELPCS FKALRSQQHR WTCGPANLLR KMAGQIIRSE NVSLWKKWYM LYSFFFMRKI VAHILTFCFY
401: CVILPATVLF PEVTVPKWAA FYLPSLITLL IAIGRLRSIH LLAFWVLFEN AMSLLRAKAL VMGLFETGRV QEWVVTEKLG DTLKTKLIPQ VPNVRFRERV
501: HLLELLVGAY LLFCGIYDIV YGKNTLYVYL LFQSVAFFVV GFGFVGKYVP ASSYLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)