AT2G35210.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.785 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : root and pollen arfgap | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
root and pollen arfgap (RPA); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 3638 Blast hits to 3466 proteins in 238 species: Archae - 0; Bacteria - 14; Metazoa - 1949; Fungi - 623; Plants - 559; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:14836206..14837946 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43099.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK 101: TEAKYTSRAA DLYKQILAKE VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV KKPLGAKKTG KTGGLGARKL 201: TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK 301: KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)