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AT2G33360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3527)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G04490.2); Has 134 Blast hits to 133 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 120; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ2ReggNOG:ENOG410YDX0EMBL:AC002332EMBL:BT053764
EMBL:CP002685EnsemblPlants:AT2G33360EnsemblPlants:AT2G33360.1entrez:817899
ExpressionAtlas:O22787GeneID:817899GO:GO:0005773Gramene:AT2G33360.1
hmmpanther:PTHR31390hmmpanther:PTHR31390:SF2HOGENOM:HOG000090809InterPro:IPR021916
OMA:KVGGWGMPfam:PF12043PhylomeDB:O22787PIR:E84744
Proteomes:UP000006548RefSeq:NP_180894.1TAIR:AT2G33360UniGene:At.12119
UniProt:O22787
Coordinates (TAIR10) chr2:+:14140901..14142870
Molecular Weight (calculated) 66510.70 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.48
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVSPDAQK DDLELEDSLN IDENLSGGNG LLKSGNLLSQ KRQQCSLVSN SGKWLQIVKN GPKGSFSRAT SFFDNKIPRQ LVSVDEKYLR RCLDLINISA
101: FKSASCSLSL NLVGSKMSLS SRRFDLPVIP KENVARLVFD LPLVDDSGSP VISRAIIGCK RVTYMLDKPT LHSLEALDGD GNNIGTRRDH NGESELVSYD
201: VVRKIEEKNT PDSQFLSYHS GNMPRKAVSL SSTNSLSSSS SEQSSSSWSP SSSVSQGTLQ FTMKDNKTPH FVFSLDDQKE IYVASLSTTS VGSGFDRSSL
301: DYSYLIHLKK GRGSEPQHLV GKLKVSTLFS VSSTNEKTVE RQFVLFSSGG NPQLPCHKDI RKNRGLPKKV VDALKSTKRT SRQRSISRFS RTSSIPDFCS
401: WEPFQEHDSD LEPISLLDND LPPNLETSAV VVREQFPVEE EEEEEVEKVG GWGMKFLKKI PLARTKDASK CSKHSTSIDV VIPLGIHGGP RNRNGGPSSL
501: IQRWKSGGCC DCSGWDLGCP LTVLKGQARK DQSEGQCNLF ELFTEGLMQG SPGLRIMNVR DGLYFVQSQA KISVLQSFSI ALAYIHSQSQ RLRPWSSKKC
601: TEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)