AT2G32080.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : purin-rich alpha 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
purin-rich alpha 1 (PUR ALPHA-1); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUR-alpha/beta/gamma, DNA/RNA-binding (InterPro:IPR006628); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:13642716..13644036 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32202.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEANSGGGGG AEGGRAVTGG GGGGGGSDVE LVSKTLQVEH KLFYFDLKEN PRGRYLKISE KTSATRSTII VPSSGISWFL DLFNYYVNSE EHELFSKELQ 101: LDSKVFYFDI GENRRGRFLK VSEASVSRNR STIIVPAGSS PDEGWAAFRN ILAEIHEASG LFVMPNQVKP SDGQEHLVDD VGAGFIPGHG SQQPSSSEHN 201: VDRTIDSPGQ EETGMTGVSK VIRADQKRFF FDLGNNNRGH FLRISEVAGS DRSSIILPLS GLKQFHEVIG HFVEITKDKI EGMTGANVRT VDPPQR |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)