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AT2G25640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SPOC domain / Transcription elongation factor S-II protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 1179 Blast hits to 1045 proteins in 235 species: Archae - 0; Bacteria - 202; Metazoa - 503; Fungi - 239; Plants - 160; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQ8UeggNOG:ENOG41101CIEMBL:CP002685EnsemblPlants:AT2G25640
EnsemblPlants:AT2G25640.1entrez:817105Gene3D:1.10.472.30GeneID:817105
GO:GO:0003746GO:GO:0005634GO:GO:0006351GO:GO:0008270
Gramene:AT2G25640.1hmmpanther:PTHR11477hmmpanther:PTHR11477:SF17InParanoid:F4ISL5
InterPro:IPR003618InterPro:IPR012921KEGG:ath:AT2G25640OMA:WALESDI
PaxDb:F4ISL5Pfam:PF07500Pfam:PF07744Pfscan:PS51321
PRIDE:F4ISL5PROSITE:PS51321ProteinModelPortal:F4ISL5Proteomes:UP000006548
RefSeq:NP_180135.2SMART:SM00510SMR:F4ISL5SUPFAM:0037100
SUPFAM:SSF46942TAIR:AT2G25640UniGene:At.38993UniProt:F4ISL5
Coordinates (TAIR10) chr2:+:10910836..10913908
Molecular Weight (calculated) 81201.10 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.29
Length 745 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNNLLPQPC MQMGQFINVP TPTPELISNP EMRLSQPICS HISGGRQDFH VMLPSVVGLG SVNMDKTLLP GKRKSPLHPS VQNKRMALPM EGRPWASAPM
101: PVQLSSVSPR TQYLPASFVS KNSFVSFSKP GKQAAARKPT LQKPMLLKPQ SESSGSVRSK MRESLAGALA MVQCQMDVPN ESKMLDSETV ANPLEGHVSG
201: PVSAASGVDV MVSNGSTEML TLSDPSPVAG ISVQTVLPEI LSIAKTSDAQ VPEAVKPFVQ DNVSYSDNVF SKDDLLQGND LSWALESDIE FTVNCQNEMI
301: GAMANDGSLE KLLLDPQVLA FEIETELFKL FGGVNKKYKE KGRSLLFNLK DKSNPKLREK VMYGEIAAER LCSMSAEELA SKELAEWRQA KAEEMAQMVV
401: LQDTEVDIRS LVRKTHKGEF QVEVEPMDSG SVEVSVGMSS INWSRTKNFK KKTPSITKTL GVKNELNSSN ESTGPINGVT IDDEMQAATG SLPPIVSLDE
501: FMSSIDSESP SGFLSSDTEK KPSVSDNNDV EEVLVSSPKE SANIDLCTSP VKAEALSPLT AKASSPVNAE DADIVSSKPS SDLKSKTTSV FIPDGERLWE
601: GVLQLSPSTV SSVIGILRSG EKTTTKEWPI LLEIKGRVRL DAFEKFVREL PNSRSRAVMV MCFVCKEECS KTEQENISEV VDSYAKDGRV GYAEPASGVE
701: LYLCPTRGRT VEILNKIVPR NQLDFLKSIN DDGLIGVVVW RRHTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)