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AT5G25780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20374526 (2010): cytosol
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 3B-2
Curator
Summary (TAIR10)
member of eIF3b - eukaryotic initiation factor 3b
Computational
Description (TAIR10)
eukaryotic translation initiation factor 3B-2 (EIF3B-2); FUNCTIONS IN: protein binding, nucleic acid binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Translation initiation factor eIF-3b (InterPro:IPR011400), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: translation initiation factor 3B1 (TAIR:AT5G27640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5354eggNOG:KOG2314EMBL:BT002393EMBL:CP002688
EnsemblPlants:AT5G25780EnsemblPlants:AT5G25780.1entrez:832647Gene3D:2.120.10.30
Gene3D:2.130.10.10Gene3D:3.30.70.330GeneID:832647GO:GO:0000166
GO:GO:0001731GO:GO:0003743GO:GO:0005634GO:GO:0005737
GO:GO:0005829GO:GO:0005852GO:GO:0006446GO:GO:0016282
GO:GO:0033290Gramene:AT5G25780.1HAMAP:MF_03001hmmpanther:PTHR14068
hmmpanther:PTHR14068:SF0InterPro:IPR000504InterPro:IPR011042InterPro:IPR011400
InterPro:IPR012677InterPro:IPR013979InterPro:IPR015943KEGG:ath:AT5G25780
KO:K03253ncoils:CoilOMA:DISPCEQPANTHER:PTHR14068
Pfam:PF00076Pfam:PF08662Pfscan:PS50102PhylomeDB:Q8GUM1
PIRSF:PIRSF036424PROSITE:PS50102Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702RefSeq:NP_568477.1
SMR:Q8GUM1STRING:3702.AT5G25780.1SUPFAM:SSF54928SUPFAM:SSF82171
TAIR:AT5G25780tair10-symbols:ATEIF3B-2tair10-symbols:EIF3Btair10-symbols:EIF3B-2
UniGene:At.16948UniProt:Q8GUM1
Coordinates (TAIR10) chr5:-:8973420..8976758
Molecular Weight (calculated) 82180.90 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.56
Length 714 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP
101: DTKMTLGYCF IEFNTPQEAQ NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK
201: KPEPVHKRSY WTESYVQWSP IGTYLVTLHK QGAAVWGGAD TFTRLMRYQH SMVKLVDFSP GEKYLVTYHS QEPSNPRDAS KVEIKVFDVR TGRMMRDFKG
301: SADEFSIGGP GGVAGASWPV FRWAGGKDDK YFAKLSKNTI SVYETETFSL IDKKSMKVDN VVDICWSPTD SILSLFVPEQ GGGNQPAKVA LVQIPSKVEL
401: RQKNLFSVSD CKMYWQSSGE YLAVKVDRYT KTKKSTYSGF ELFRIKERDI PIEVLELDNK NDKIIAFAWE PKGHRFAVIH GDQPRPDVSF YSMKTAQNTG
501: RVSKLATLKA KQANALFWSP TGKYIILAGL KGFNGQLEFF NVDELETMAT AEHFMATDIE WDPTGRYVAT SVTTVHEMEN GFTIWSFNGN MVYRILKDHF
601: FQLAWRPRPA SFLTAEKEEE IAKNLRNYSK RYEAEDQDVS LLLSEQDREK RRALNEEWQK WVMQWKSLHE EEKLVRQNLR DGEVSDVEED EYEAKEVEFE
701: DLIDVTEEIV QELM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)