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AT2G23890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT1G75210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1062-MONOMEReggNOG:ENOG410XT8WeggNOG:KOG2470EMBL:AK227911
EMBL:BT006381EMBL:CP002685EnsemblPlants:AT2G23890EnsemblPlants:AT2G23890.1
entrez:816921Gene3D:3.40.50.1000GeneID:816921GO:GO:0016787
GO:GO:0046872Gramene:AT2G23890.1hmmpanther:PTHR12103hmmpanther:PTHR12103:SF12
HOGENOM:HOG000084781InterPro:IPR008380InterPro:IPR016695InterPro:IPR023214
KEGG:ath:AT2G23890ncoils:CoilOMA:LHWDRITPANTHER:PTHR12103
Pfam:PF05761PhylomeDB:Q84MD4PIRSF:PIRSF017434Proteomes:UP000006548
RefSeq:NP_179967.3SMR:Q84MD4STRING:3702.AT2G23890.1SUPFAM:SSF56784
TAIR:AT2G23890TIGRfam:TIGR02244TIGRFAMs:TIGR02244UniGene:At.39235
UniProt:Q84MD4
Coordinates (TAIR10) chr2:+:10170680..10173622
Molecular Weight (calculated) 64314.80 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.42
Length 553 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSRRLLLP LGASLTRGRF SSDQIRNGFL RNFRGFATVT SSEPALANLE AKYAVALPEC STVEDEITKI RHEFELAKQR FLNIPEAINS MPKMNPQGIY
101: VNKNLRLDNI QVYGFDYDYT LAHYSSHLQS LIYDLAKKHM VNEFRYPDVC TQFEYDPTFP IRGLYYDKLK GCLMKLDFFG SIEPDGCYFG RRKLSRKEIE
201: SMYGTRHIGR DQARGLVGLM DFFCFSEACL IADMVQYFVD AKLEFDASNI YNDVNRAIQH VHRSGLVHRG ILADPNRYLL KNGQLLRFLR MLKDKGKKLF
301: LLTNSPYNFV DGGMRFLMEE SFGFGDSWRE LFDVVIAKAN KPEFYTSEHP FRCYDSERDN LAFTKVDAFD PKKVYYHGCL KSFLEITKWH GPEVIYFGDH
401: LFSDLRGPSK AGWRTAAIIH ELEREIQIQN DDSYRFEQAK FHIIQELLGR FHATVSNNQR SEACQSLLDE LNNARQRARD TMKQMFNRSF GATFVTDTGQ
501: ESAFSYHIHQ YADVYTSKPE NFLLYRPEAW LHVPYDIKIM PHHVKVASTL FKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)