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AT2G21860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : violaxanthin de-epoxidase-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
violaxanthin de-epoxidase-related; BEST Arabidopsis thaliana protein match is: non-photochemical quenching 1 (TAIR:AT1G08550.2); Has 151 Blast hits to 151 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH3EeggNOG:ENOG410YJWBEMBL:AC007019EMBL:AY039866
EMBL:CP002685EnsemblPlants:AT2G21860EnsemblPlants:AT2G21860.1entrez:816722
GeneID:816722GO:GO:0016851Gramene:AT2G21860.1gramene_plant_reactome:1119449
gramene_plant_reactome:6875119hmmpanther:PTHR33970hmmpanther:PTHR33970:SF2InterPro:IPR016017
InterPro:IPR022571KEGG:00860+6.6.1.1KEGG:ath:AT2G21860OMA:WEEVMLH
Pfam:PF11965PhylomeDB:Q9SJ13PIR:A84606Proteomes:UP000006548
RefSeq:NP_565520.1SMART:SM00907STRING:3702.AT2G21860.1TAIR:AT2G21860
UniGene:At.14267UniProt:Q9SJ13
Coordinates (TAIR10) chr2:-:9318333..9319990
Molecular Weight (calculated) 59290.80 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.34
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIPLKAPS LPGTRECSPF LNRFVTHQPV NFIRKFHPSL DEASFSRRGR TTVVRVLETE KSTKIEKPEP PVKLIALVGK GEVSPLKSTS WEEVMLHTAR
101: RLKWVDEGYE MLVFDDEIVS SNDQRAMNLT QELNQTDILV VVAVNNSESV NWIQTNSKNV KNMICFESSP NLMNRLGGTD VGSVNKDKEV TEVVKTVGDA
201: WERRNSDDIR FCLLVIINAY IRPVPVLQNL RSKGFSTLSC MVKNCGPQIL NCLLDPNCRK ALQCLNQCSP VDQVCSYRCI ASYEGPYFEA FSLCVLQKHN
301: CLELDAKIPE KPYVPPMTSF RGKELCHDTA EDLFVGWLGE LEWSWRVVAG QNPAYDQFPC QYQLFYRGKG KSSFWYEPVF QVRTLEEKLV WRRRRYSVKR
401: GKIPATFRFS VLDNGVVSNE FWTIVDVSDD LSWGLFHYHG AARVAGQSYT GAVLVTPDGS YPAEKDKERL QSALEKCGIK EWELFAVDNC SCENPPLGIP
501: QGSRLHSRIS IIEEPDSEEK FN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)