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AT1G09830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycinamide ribonucleotide (GAR) synthetase
Curator
Summary (TAIR10)
glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide
Computational
Description (TAIR10)
Glycinamide ribonucleotide (GAR) synthetase; FUNCTIONS IN: phosphoribosylamine-glycine ligase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide synthetase, conserved site (InterPro:IPR020559), Phosphoribosylglycinamide synthetase, C-domain (InterPro:IPR020560), Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (InterPro:IPR020561), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), PreATP-grasp-like fold (InterPro:IPR016185), Phosphoribosylglycinamide synthetase, N-domain (InterPro:IPR020562), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054), Phosphoribosylglycinamide synthetase (InterPro:IPR000115); Has 12648 Blast hits to 12644 proteins in 2666 species: Archae - 340; Bacteria - 7373; Metazoa - 216; Fungi - 226; Plants - 88; Viruses - 0; Other Eukaryotes - 4405 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09830-MONOMERBioGrid:22756EC:6.3.4.13eggNOG:COG0151
eggNOG:KOG0237EMBL:AC000132EMBL:AY050820EMBL:AY091422
EMBL:CP002684EMBL:X74766EnsemblPlants:AT1G09830EnsemblPlants:AT1G09830.1
entrez:837515Gene3D:3.30.1490.20Gene3D:3.30.470.20Gene3D:3.40.50.20
Gene3D:3.90.600.10GeneID:837515Genevisible:P52420GO:GO:0004637
GO:GO:0005524GO:GO:0006189GO:GO:0009113GO:GO:0009507
GO:GO:0009570GO:GO:0046872Gramene:AT1G09830.1gramene_pathway:6.3.4.13
gramene_pathway:PWY-6121HAMAP:MF_00138hmmpanther:PTHR10520hmmpanther:PTHR10520:SF36
HOGENOM:HOG000033463InParanoid:P52420InterPro:IPR000115InterPro:IPR011054
InterPro:IPR011761InterPro:IPR013815InterPro:IPR013816InterPro:IPR016185
InterPro:IPR020559InterPro:IPR020560InterPro:IPR020561InterPro:IPR020562
KEGG:00230+6.3.4.13KEGG:ath:AT1G09830KO:K01945MINT:MINT-8067347
OMA:DEFGPPYPaxDb:P52420Pfam:P52420Pfam:PF01071
Pfam:PF02843Pfam:PF02844Pfscan:PS50975PhylomeDB:P52420
PIR:E86232PIR:S37104PRIDE:P52420PRO:PR:P52420
PROSITE:PS00184PROSITE:PS50975ProteinModelPortal:P52420Proteomes:UP000006548
Reactome:R-ATH-73817RefSeq:NP_172454.1scanprosite:PS00184SMART:SM01210
SMR:P52420STRING:3702.AT1G09830.1SUPFAM:SSF51246SUPFAM:SSF52440
SUPFAM:SSF56059TAIR:AT1G09830TIGRfam:TIGR00877TIGRFAMs:TIGR00877
UniGene:At.42208UniGene:At.67297UniPathway:UPA00074UniProt:P52420
Coordinates (TAIR10) chr1:-:3192783..3194936
Molecular Weight (calculated) 56476.50 Da
IEP (calculated) 5.39
GRAVY (calculated) -0.02
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLCASNCY PSSSSINLFS NNNNPTKPFL LSLRFASSNS LPFVAPLKFS TTNHVLSNSR FSSNRIQRRL FLLRCVSEES QPSLSIGNGG SEERVNVLVI
101: GGGGREHALC HALKRSPSCD SVLCAPGNAG ISSSGDATCV PDLDISDSLA VISFCQKWNV GLVVVGPEVP LVAGLANDLV KAGILTFGPS SQAAALEGSK
201: NFMKNLCHKY NIPTAKYKTF SDASAAKEYI QEQGAPIVIK ADGLAAGKGV TVAMELEEAF EAVDSMLVKG VFGSAGCQVV VEEFLEGEEA SFFALVDGEN
301: AIPLESAQDH KRVGDGDTGP NTGGMGAYSP APVLTKELQD FVMESIIHPT VKGMAEEGCK FVGVLFAGLM IEKKSGLPKL IEFNVRFGDP ECQVLMMRLE
401: SDLAKVLLAA CKGELSGVSL DWSKDSAMVV VMASNGYPGS YEKGSIIKNL EEAERVAPGV KVFHAGTGLD SEGNVVATGG RVLGVTAKGK DLEEARERAY
501: SAVQQINWPG GFFRHDIGWR ALRQKQVATK EE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)