suba logo
AT2G20562.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0NGeggNOG:ENOG410YUNQEMBL:CP002685EMBL:DQ492219
EnsemblPlants:AT2G20562EnsemblPlants:AT2G20562.1entrez:5007888GeneID:5007888
GO:GO:0016021Gramene:AT2G20562.1hmmpanther:PTHR33834KEGG:ath:AT2G20562
OMA:CFCFAALPhylomeDB:Q1G309Proteomes:UP000006548RefSeq:NP_001077925.1
TAIR:AT2G20562TMHMM:TMhelixUniGene:At.68389UniProt:Q1G309
Coordinates (TAIR10) chr2:-:8850367..8850835
Molecular Weight (calculated) 7850.21 Da
IEP (calculated) 8.04
GRAVY (calculated) 1.58
Length 73 amino acids
Sequence (TAIR10)
(BLAST)
1: MGDCRPLGFL IGLPFALVAL VLALVGAVIW IIGTVLSCLC PCCFCFAALA NFAVDLIKLP IKVLRWFTHS IPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)