AT2G19920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-dependent RNA polymerase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-dependent RNA polymerase family protein; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8602222..8606887 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105186.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 927 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMTTTMDYNS SDQGFSWSEI ALLGSVETML EKVYGKHNHH PPIKVETRRR LSSISEELAL ETLRKVLNMP NVKTLDGIII YFLNDAVTVD GSPRLWSGES 101: PVQFPRTPGK KSCRASQAEV SLDREDPSPK FLRGDENGES KHISLLLALG ELEFKKAFLL LTYLGGKSLG EVISGDEIRQ WKDLPMVAYE RAVWFKLGQN 201: EERMQLESDS GKTHYYQCHV APDGSYRLKG YFLENTGTHL HKVLGDDNVL TVRFDQLPKE STYCDNPYSK YKEIAKNGIM VGLRRYQFFV FKDGGKAEKK 301: KRNSTKQVKC YFIRTGSTAS SDMENPYILS GMSIHEARMH FMHVHTLPSP ANYMARFSLI LSKTKKLEVD MTEITVMQID DIHCHDQSNN DVLDKNGKPR 401: IHSDGTGYIS EDLARMCPLN IFKGKSMRSN NIQGTCVQEP PLLIQIRMFN DGSAVKGIFL LNKNLPPQTV QVRPSMIKVY KDKNLSNFST FNSLEVVTTS 501: NPPKRAKLSK NLVALLSYGG VPNDFFLDIL LNTLEKKKTI FFKVRAAGKA ALHYGNMDDK NALQMIMAGI PLDEPYLKHY LSKLLKLEKD DLKAGKLPID 601: ESYYLMGTVD PTGELKEDEV SGLAKSQDVL VYRNPGLHFG DIHILKATYV KSLEQYVGNS KYGVFFPQKG PRSLGDEIAG GDFDGDMYFI SRNPKLLEHY 701: KPSEPWVSSS PRSKIYTGRQ PSELSPEQLE EELFKIFLKT GFSPSSVIGQ AADSWLAIMD RFLTLGDENV KEKAEMKKKM LKLTDIYYDA IDAPKTGTEV 801: NLPLDVKVDL FPHYMERNKT FKSTSILGLI FDTVDFHNAE DTTPSGISKL QCFEDEPVSE FDMEKCKLWH KDYRKEMCQA MNSDDDDSCN EVIQKYKQEF 901: YSAAGFKESK KILEELYPKA LALYNVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)