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AT2G18300.3
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cytokinin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BR enhanced expression 2 (TAIR:AT4G36540.1).
Protein Annotations
eggNOG:ENOG410JCIPeggNOG:ENOG411190EEMBL:CP002685EnsemblPlants:AT2G18300
EnsemblPlants:AT2G18300.3entrez:816346ExpressionAtlas:F4IQH8Gene3D:4.10.280.10
GeneID:816346GO:GO:0003700GO:GO:0005634Gramene:AT2G18300.3
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF132InterPro:IPR011598InterPro:IPR031064
KEGG:ath:AT2G18300OMA:SIMVDVPPANTHER:PTHR12565:SF132PaxDb:F4IQH8
Pfam:PF00010Pfscan:PS50888PROSITE:PS50888ProteinModelPortal:F4IQH8
Proteomes:UP000006548RefSeq:NP_001189548.1SMART:SM00353SMR:F4IQH8
STRING:3702.AT2G18300.3SUPFAM:SSF47459TAIR:AT2G18300UniGene:At.21771
UniProt:F4IQH8
Coordinates (TAIR10) chr2:-:7952546..7954446
Molecular Weight (calculated) 40877.50 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.60
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLENSCGNY NKISKILLST KCTHQYVPIR RVWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)