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AT2G07715.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:ATMG00560.1); Has 8618 Blast hits to 8616 proteins in 3083 species: Archae - 0; Bacteria - 5492; Metazoa - 11; Fungi - 129; Plants - 1005; Viruses - 0; Other Eukaryotes - 1981 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0090eggNOG:KOG0438EMBL:CP002685EnsemblPlants:AT2G07715
EnsemblPlants:AT2G07715.1entrez:815389Gene3D:2.40.50.140GeneID:815389
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT2G07715.1
hmmpanther:PTHR13691hmmpanther:PTHR13691:SF20InParanoid:F4IMC7InterPro:IPR002171
InterPro:IPR012340InterPro:IPR022666iPTMnet:F4IMC7KEGG:ath:AT2G07715
PANTHER:PTHR13691PaxDb:F4IMC7Pfam:PF00181PRIDE:F4IMC7
ProteinModelPortal:F4IMC7Proteomes:UP000006548RefSeq:NP_178797.2SMART:SM01383
SMR:F4IMC7STRING:3702.AT2G07715.1SUPFAM:SSF50249TAIR:AT2G07715
UniGene:At.70402UniProt:F4IMC7
Coordinates (TAIR10) chr2:+:3411180..3412694
Molecular Weight (calculated) 42488.60 Da
IEP (calculated) 11.75
GRAVY (calculated) -0.43
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPGRARALR QFTLSTGKSA GRNSSGRITV FHRGGGSKRL LRRIDLKRST SSMGIVESIE YDPNRSSQIA PVRWIKGGCQ KKMNTIEKFA PPRKILEPTT
101: NTISGLFSFS FLPGKVDKRK VACFSPGLMA AYVVVGLPTG MPPLSSSKSA FASKGAGSTK TLVKDVFFSA FSSLKAKRET ASLAFASSFG FPRIAVAGAK
201: PAFFAPRMRQ KVRGKSTFSL CEVQKGRTHS ILWAHRIKGK AGLSWQSFRR QDTLGLVGAA GHKKSKPKTD QGNLPAKPIG ERAKQLKALR GLRAKDGACK
301: VDLTREERSN GKAIRPFGSS RSIAHIQISY LIGERGNTHE APTEREGLPG RMPMGAGFFE KARADSETWD LGLATNEYFS SSFLRQRLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)