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AT2G03680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : spiral1
Curator
Summary (TAIR10)
The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.
Computational
Description (TAIR10)
SPIRAL1 (SPR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anisotropic cell growth, unidimensional cell growth; LOCATED IN: spindle microtubule, cortical microtubule, transverse to long axis, preprophase band, phragmoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like2 (TAIR:AT1G69230.2); Has 191 Blast hits to 165 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 6; Plants - 146; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioGrid:297eggNOG:ENOG410JSD4eggNOG:ENOG41108X4EMBL:AC006836
EMBL:AF412118EMBL:AY045933EMBL:AY084847EMBL:AY113867
EMBL:AY464947EMBL:CP002685EMBL:Z96936EnsemblPlants:AT2G03680
EnsemblPlants:AT2G03680.1EnsemblPlants:AT2G03680.2entrez:814896GeneID:814896
Genevisible:Q9SJW3GO:GO:0005876GO:GO:0009524GO:GO:0009574
GO:GO:0009826GO:GO:0010005GO:GO:0043622GO:GO:0051211
GO:GO:0071472Gramene:AT2G03680.1Gramene:AT2G03680.2hmmpanther:PTHR33403
hmmpanther:PTHR33403:SF1HOGENOM:HOG000240966InParanoid:Q9SJW3IntAct:Q9SJW3
iPTMnet:Q9SJW3KEGG:ath:AT2G03680KO:K18635OMA:PTESNNG
PaxDb:Q9SJW3Pfam:Q9SJW3PhylomeDB:Q9SJW3PIR:B84451
PRIDE:Q9SJW3PRO:PR:Q9SJW3ProteinModelPortal:Q9SJW3Proteomes:UP000006548
RefSeq:NP_001154491.1RefSeq:NP_178464.1STRING:3702.AT2G03680.1TAIR:AT2G03680
tair10-symbols:SKU6tair10-symbols:SPR1UniGene:At.24723UniGene:At.48415
UniProt:Q9SJW3
Coordinates (TAIR10) chr2:+:1121398..1121850
Molecular Weight (calculated) 11920.80 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.47
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGNSCGGG QSSLDYLFGG DAPAPKPVPA PRPAPTESNN GPAPPVTAVT ATALTTATTS VEPAELNKQI PAGIKTPVNN YARAEGQNTG NFLTDRPSTK
101: VHAAPGGGSS LDYLFTGGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)