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AT1G77420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G16120.1); Has 4552 Blast hits to 4550 proteins in 1360 species: Archae - 49; Bacteria - 3106; Metazoa - 121; Fungi - 218; Plants - 474; Viruses - 41; Other Eukaryotes - 543 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G77420-MONOMEReggNOG:COG2267eggNOG:KOG1455EMBL:AC010704
EMBL:AC078898EMBL:AK118892EMBL:BT005416EMBL:CP002684
EnsemblPlants:AT1G77420EnsemblPlants:AT1G77420.1entrez:844079ESTHER:arath-T5M16.2
Gene3D:3.40.50.1820GeneID:844079GO:GO:0016787Gramene:AT1G77420.1
gramene_pathway:4.3.1.18gramene_pathway:PWY-6196hmmpanther:PTHR11614hmmpanther:PTHR11614:SF94
InterPro:IPR000073InterPro:IPR022742InterPro:IPR029058KEGG:ath:AT1G77420
MEROPS:S33.A39OMA:RKPPRLEPfam:PF12146PhylomeDB:Q9FVW6
PIR:E96803PRINTS:PR00111Proteomes:UP000006548Reactome:R-ATH-1482883
Reactome:R-ATH-426048RefSeq:NP_177867.1SMR:Q9FVW6STRING:3702.AT1G77420.1
SUPFAM:SSF53474TAIR:AT1G77420UniGene:At.27845UniProt:Q9FVW6
Coordinates (TAIR10) chr1:+:29093641..29095442
Molecular Weight (calculated) 42821.70 Da
IEP (calculated) 7.48
GRAVY (calculated) -0.17
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRALTPRFD TPATLSPFRY RYGSSLAITR RFAPAIVCAK RSPIDGVSDE LNLIASQNLD QAPARRLARS AFVDLQLQLD HCLFKKAPSG IRTEEWYERN
101: SKGEDIFCKS WLPKSGDEIK AAVCFCHGYG STCTFFFDGI AKQIAGFGYG VYAIDHPGFG LSDGLHGHIP SFDDLADNAI EQFTKMKGRS ELRNLPRFLL
201: GQSMGGAVAL KIHLKEPQAW DGLILVAPMC KISEDVKPPP LVLKTLILMS TLFPKAKLFP KRDLSDFFFR DLSKRKLCEY DVICYDDQTR LKTAVELLNA
301: TRDIEMQVDK VSLPLLILHG DTDKVTDPTV SKFLHKHAVS QDKTLKLYPG GYHCILEGDT DENIFTVIND IVAWLDARVD PK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)