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AT1G76080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chloroplastic drought-induced stress protein of 32 kD
Curator
Summary (TAIR10)
Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).
Computational
Description (TAIR10)
chloroplastic drought-induced stress protein of 32 kD (CDSP32); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 3263 Blast hits to 3026 proteins in 903 species: Archae - 63; Bacteria - 1344; Metazoa - 643; Fungi - 77; Plants - 661; Viruses - 3; Other Eukaryotes - 472 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG0907EMBL:AC009978EMBL:AJ318055
EMBL:AY085972EMBL:BT024860EMBL:CP002684EnsemblPlants:AT1G76080
EnsemblPlants:AT1G76080.1entrez:843940Gene3D:3.40.30.10GeneID:843940
Genevisible:Q9SGS4GO:GO:0000103GO:GO:0006457GO:GO:0006662
GO:GO:0006979GO:GO:0009414GO:GO:0009507GO:GO:0009570
GO:GO:0009941GO:GO:0015035GO:GO:0016671GO:GO:0034599
GO:GO:0045454GO:GO:0055114Gramene:AT1G76080.1hmmpanther:PTHR10438
hmmpanther:PTHR10438:SF247HOGENOM:HOG000242309InParanoid:Q9SGS4InterPro:IPR005746
InterPro:IPR012336InterPro:IPR013766iPTMnet:Q9SGS4KEGG:ath:AT1G76080
OMA:VIEVPTFPANTHER:PTHR10438PaxDb:Q9SGS4Pfam:PF00085
Pfam:Q9SGS4PhylomeDB:Q9SGS4PIR:A96789PRIDE:Q9SGS4
PRO:PR:Q9SGS4ProteinModelPortal:Q9SGS4Proteomes:UP000006548RefSeq:NP_177735.1
SMR:Q9SGS4STRING:3702.AT1G76080.1SUPFAM:SSF52833TAIR:AT1G76080
tair10-symbols:ATCDSP32tair10-symbols:CDSP32UniGene:At.16596UniProt:Q9SGS4
Coordinates (TAIR10) chr1:-:28548063..28549348
Molecular Weight (calculated) 33686.70 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.26
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVANFLAK PISTVVPRPS SAVASTSSFV FFNHKTNPLF RRKNLPKRLF SAVKIKAGAA SPGKVGTPPA NDEKVQKIHS GEEFDVALKN AKSKLVVAEF
101: ATSKSDQSNK IYPFMVELSR TCNDVVFLLV MGDESDKTRE LCRREKIEKV PHFSFYKSME KIHEEEGIEP DQLMGDVLYY GDNHSAVVQL HGRPDVEKLI
201: DENRTGGKLI VLDVGLKHCG PCVKVYPTVL KLSRSMSETV VFARMNGDEN DSCMEFLKDM NVIEVPTFLF IRDGEIRGRY VGSGKGELIG EILRYSGVRV
301: TY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)