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AT1G75630.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plant-type vacuole plant-type vacuole membrane
  • PMID:24030099 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
Curator
Summary (TAIR10)
vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA,
Computational
Description (TAIR10)
vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (AVA-P4); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT1G19910.1).
Protein Annotations
eggNOG:COG0636eggNOG:KOG0232EMBL:CP002684EnsemblPlants:AT1G75630
EnsemblPlants:AT1G75630.2entrez:843898ExpressionAtlas:F4HZ57GeneID:843898
GO:GO:0015078GO:GO:0015991GO:GO:0016021GO:GO:0033179
Gramene:AT1G75630.2hmmpanther:PTHR10263hmmpanther:PTHR10263:SF13InterPro:IPR000245
InterPro:IPR002379InterPro:IPR011555KEGG:ath:AT1G75630KO:K02155
OMA:RASQDVTPaxDb:F4HZ57Pfam:PF00137PRINTS:PR00122
ProteinModelPortal:F4HZ57Proteomes:UP000006548RefSeq:NP_001185404.1SMR:F4HZ57
STRING:3702.AT1G75630.2SUPFAM:0035882SUPFAM:SSF81333TAIR:AT1G75630
tair10-symbols:AVA-P4TIGRfam:TIGR01100TIGRFAMs:TIGR01100TMHMM:TMhelix
UniGene:At.6076UniProt:F4HZ57
Coordinates (TAIR10) chr1:+:28400662..28402032
Molecular Weight (calculated) 20535.50 Da
IEP (calculated) 8.02
GRAVY (calculated) 0.82
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSGFSGDE TAPFFGFLGA AAALVFSCMG AAYGTAKSGV GVASMGVMRP ELVMKSIVPV VMAGVLGIYG LIIAVIISTG INPKAKSYYL FDGYAHLSSG
101: LACGLAGLSA GMAIGIVGDA GVRVVDCNPD SKIKIYSFTT SFLSNLSQKE LFIDLLSANA QQPKLFVGMI LILIFAEALA LYGLIVGIIL SSRAGQSRAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)