AT1G74520.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.688 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : HVA22 homologue A | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
HVA22 homologue A (HVA22A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue C (TAIR:AT1G69700.1); Has 1523 Blast hits to 1523 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 215; Plants - 516; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:28008109..28009156 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 20680.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 177 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGSGAGNFLK VLLRNFDVLA GPVVSLVYPL YASVQAIETQ SHADDKQWLT YWVLYSLLTL IELTFAKLIE WLPIWSYMKL ILTCWLVIPY FSGAAYVYEH 101: FVRPVFVNPR SINIWYVPKK MDIFRKPDDV LTAAEKYIAE NGPDAFEKIL SRADKSKRYN KHEYESYETM YGEGYQY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)