suba logo
AT4G01510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16725371 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arv1-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARV2; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT1G01020.1); Has 318 Blast hits to 318 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 116; Plants - 41; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5254eggNOG:KOG3134EMBL:AY758071EMBL:CP002687
EnsemblPlants:AT4G01510EnsemblPlants:AT4G01510.1entrez:826763GeneID:826763
GO:GO:0005783GO:GO:0005794GO:GO:0006665GO:GO:0016021
GO:GO:0016125GO:GO:0032366GO:GO:0032541GO:GO:0097036
Gramene:AT4G01510.1hmmpanther:PTHR14467InterPro:IPR007290KEGG:ath:AT4G01510
OMA:IFIVEMFPANTHER:PTHR14467Pfam:PF04161Proteomes:UP000006548
Reactome:R-ATH-191273RefSeq:NP_192060.2STRING:3702.AT4G01510.1TAIR:AT4G01510
tair10-symbols:ARV2TMHMM:TMhelixUniGene:At.34415UniProt:Q5MK23
Coordinates (TAIR10) chr4:+:642755..644190
Molecular Weight (calculated) 25951.40 Da
IEP (calculated) 7.78
GRAVY (calculated) 0.61
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MAREKKTCVE CGHKVKSLFI QYSPGNFRLM KCENCEEVAD EYVECELLII FIDLILHKTK AYRHLLYNVV NQESANVQHL LWKLVLAYLL LDTYRSLLLR
101: RTNDGSNVSM SFLFESLEVL VNVLSANFAF VFSFAFAAKL MLVMPRGKEI LLTILISSYV KIFLFAMPVW EFPVSVIFIV DMLVLTSNAV ALKVMTESAT
201: SRCLAVCFIA HSIRFLVDQI SGHLGSVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)