AT1G72500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G19110.1); Has 1407 Blast hits to 1406 proteins in 307 species: Archae - 6; Bacteria - 522; Metazoa - 484; Fungi - 59; Plants - 110; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27295336..27298556 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84538.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.94 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 756 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEEFALRVE QGLQLARRIY YGKGIAPPVV PDPPSSPENF LPTAITAYAS ITDPVAVDNP DVPSYQPYVH ARCDPSALVP LQMLGIEMNI DCWLDTAFVT 101: VTGRWRVHCV RPSKRFDCCV GVPMGEKGSF LGAEIDVLNN EKSYQTKLVT EDETSDFDNV HKDKDSRFFK SHIYTFKIPH VAGGSIFSVN VTWSQKLIYK 201: DGKFHLNVPF RFPSYVNPIG KEIIKREKIV LNMNSCVSGG EIASSFTSHP LKIIHRVAGE LSCEYEAEVP SWSRVDFGVS FTVSSGDLCG NVLVKSPSPW 301: DSDDRGIFCL YLFPGTTKHT KLFKRRVVFV IDISASMKWK PLEDVKKALL ECLAKLQAED VFNIIAFNDE ILEFSTSMEF ATDETISAVT EWLDSNLIAN 401: GGTNMLLPLK QAMKLLEGSN IGVPLVYLVT DGSVENEREI CHAMKESCSR NGKSISPRIS TFGIGSFCNH YFLQMLARIG NGYYDGTNNT DSFEHQMSRL 501: FEIASSTIVA NTTFDALKLL RSVELFPCQV PDITLGDPLI LSGRYKGEFP DEVELRGTLA DMSCFTIELT VQKAKDIPLD KVLARRQINE LTARAWFEDK 601: KELQEKVMRL SIQTGFPSEY TQMVLSVKHD EEEKTMARPV SIKEILRNPP YQIHKQMQRS NSMRRSLLGK QGYGFGNVAA TLKNVPPWME EPKEVEGTEL 701: LIRAASGVVD RVCCMCCLQC MSRVSDQCTI VFSQLCAALA CFQCIGCCFE VCGCLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)