AT1G71710.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.956 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DNAse I-like superfamily protein; FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase I (TAIR:AT1G34120.1); Has 2765 Blast hits to 2076 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 685; Plants - 795; Viruses - 3; Other Eukaryotes - 324 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:26973796..26976774 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 74783.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSPVEPAGIM KKSHRQKSQR LWAKLVMRKW LNISGRDPEY GADTDNESEN EDAREDNDDS SSDEEGGSGS RGRESKVYEN AEDAIAAASA VVDAAAAAAE 101: FISNDAPMKL RRRNSETLRA QYINNKEIRV CVGTWNVGGI SPPSDLDIDD WIEINQPADI YVLGLQEIVP LNAGNILGAE DDRPVAKWEE VIREALNRVR 201: PKLSGVKSYS DPPSPGRFKP FEETHDIIEE EVAFESDSDA GVEIHPIDEE EEEETDRLWA LKHDGGVIGE VKTLVDPNTG LPVVEIKRQF SIPKKLDRQL 301: CLRADSFKGI SDDDSTQTGM KTINRMLSGK ERIGLSWPEP PLNMLGPCVL DRQPSIKTVK SLKTAKSFKA YSSFKSVAGN NNGIPPEVLA LAEMDLKLLM 401: ERKRRPAYVR LVSKQMVGIL LTIWVKRSLR KHIQNVRVST VGVGVMGYIG NKGAVSVSMS INQTFFCFIN THLTAGEREV DQIKRNADVH EIHKRTVFHS 501: VSALGLPKLI YDHERIIWLG DLNYRLSSSY EKTRDLISKR EWSKLLEYDQ LVKEYRKGRA FDGWSEGTLH FPPTYKYQAN SDEYTANDGK APKRTPAWCD 601: RVLSYGKGMR LVHYRRTEQK FSDHRPVTAI YMAEVEVFSA RKLQRALTFT DAEIEDEGLV AVLV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)