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AT1G71710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase I (TAIR:AT1G34120.1); Has 2765 Blast hits to 2076 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 685; Plants - 795; Viruses - 3; Other Eukaryotes - 324 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71710-MONOMERBioCyc:ARA:GQT-770-MONOMEREC:3.1.3.36EC:3.1.3.86
eggNOG:COG5411eggNOG:KOG0565EMBL:AC012654EMBL:AC016163
EMBL:AY048296EMBL:BT001070EMBL:CP002684EnsemblPlants:AT1G71710
EnsemblPlants:AT1G71710.1entrez:843501ExpressionAtlas:Q8H0Z6Gene3D:3.60.10.10
GeneID:843501Genevisible:Q8H0Z6GO:GO:0004439GO:GO:0034485
GO:GO:0046856hmmpanther:PTHR11200hmmpanther:PTHR11200:SF128HOGENOM:HOG000241161
InParanoid:Q8H0Z6InterPro:IPR000300InterPro:IPR005135iPTMnet:Q8H0Z6
OMA:DWIEINQPaxDb:Q8H0Z6Pfam:PF03372PhylomeDB:Q8H0Z6
PIR:D96739PRIDE:Q8H0Z6PRO:PR:Q8H0Z6ProteinModelPortal:Q8H0Z6
Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-1855183Reactome:R-ATH-1855204
Reactome:R-ATH-194840RefSeq:NP_565023.1SMART:SM00128SMR:Q8H0Z6
STRING:3702.AT1G71710.1SUPFAM:SSF56219TAIR:AT1G71710UniGene:At.12019
UniProt:Q8H0Z6
Coordinates (TAIR10) chr1:-:26973796..26976774
Molecular Weight (calculated) 74783.70 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.54
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPVEPAGIM KKSHRQKSQR LWAKLVMRKW LNISGRDPEY GADTDNESEN EDAREDNDDS SSDEEGGSGS RGRESKVYEN AEDAIAAASA VVDAAAAAAE
101: FISNDAPMKL RRRNSETLRA QYINNKEIRV CVGTWNVGGI SPPSDLDIDD WIEINQPADI YVLGLQEIVP LNAGNILGAE DDRPVAKWEE VIREALNRVR
201: PKLSGVKSYS DPPSPGRFKP FEETHDIIEE EVAFESDSDA GVEIHPIDEE EEEETDRLWA LKHDGGVIGE VKTLVDPNTG LPVVEIKRQF SIPKKLDRQL
301: CLRADSFKGI SDDDSTQTGM KTINRMLSGK ERIGLSWPEP PLNMLGPCVL DRQPSIKTVK SLKTAKSFKA YSSFKSVAGN NNGIPPEVLA LAEMDLKLLM
401: ERKRRPAYVR LVSKQMVGIL LTIWVKRSLR KHIQNVRVST VGVGVMGYIG NKGAVSVSMS INQTFFCFIN THLTAGEREV DQIKRNADVH EIHKRTVFHS
501: VSALGLPKLI YDHERIIWLG DLNYRLSSSY EKTRDLISKR EWSKLLEYDQ LVKEYRKGRA FDGWSEGTLH FPPTYKYQAN SDEYTANDGK APKRTPAWCD
601: RVLSYGKGMR LVHYRRTEQK FSDHRPVTAI YMAEVEVFSA RKLQRALTFT DAEIEDEGLV AVLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)