suba logo
AT1G70980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SYNC3; FUNCTIONS IN: in 6 functions; INVOLVED IN: asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT5G56680.1); Has 17935 Blast hits to 13295 proteins in 2647 species: Archae - 620; Bacteria - 13541; Metazoa - 618; Fungi - 807; Plants - 214; Viruses - 0; Other Eukaryotes - 2135 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G70980-MONOMERBioGrid:28656EC:6.1.1.22eggNOG:COG0017
eggNOG:KOG0554EMBL:AC008148EMBL:CP002684EnsemblPlants:AT1G70980
EnsemblPlants:AT1G70980.1entrez:843436Gene3D:1.10.287.10Gene3D:2.40.50.140
GeneID:843436Genevisible:Q9SSK1GO:GO:0003677GO:GO:0004816
GO:GO:0005524GO:GO:0005829GO:GO:0006421Gramene:AT1G70980.1
gramene_pathway:6.1.1.22gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00534hmmpanther:PTHR22594
hmmpanther:PTHR22594:SF34HOGENOM:HOG000226033InParanoid:Q9SSK1InterPro:IPR000738
InterPro:IPR002312InterPro:IPR004364InterPro:IPR004365InterPro:IPR004522
InterPro:IPR006195InterPro:IPR009068InterPro:IPR012340InterPro:IPR018150
KEGG:00970+6.1.1.22KEGG:ath:AT1G70980KO:K01893OMA:HDYMDEL
PANTHER:PTHR22594PaxDb:Q9SSK1Pfam:PF00152Pfam:PF01336
Pfam:Q9SSK1Pfscan:PS50862Pfscan:PS51185PhylomeDB:Q9SSK1
PIR:B96734PRIDE:Q9SSK1PRINTS:PR01042PRO:PR:Q9SSK1
PROSITE:PS50862PROSITE:PS51185ProteinModelPortal:Q9SSK1Proteomes:UP000006548
RefSeq:NP_177254.1SMART:SM00991SMR:Q9SSK1STRING:3702.AT1G70980.1
SUPFAM:SSF50249SUPFAM:SSF55681TAIR:AT1G70980tair10-symbols:SYNC3
TIGRfam:TIGR00457TIGRFAMs:TIGR00457UniGene:At.35245UniProt:Q9SSK1
Coordinates (TAIR10) chr1:+:26762339..26764394
Molecular Weight (calculated) 63703.30 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.24
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)