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AT3G19990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:18633119 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGHMeggNOG:ENOG410XRZ5EMBL:BT022013EMBL:BT026484
EMBL:CP002686EnsemblPlants:AT3G19990EnsemblPlants:AT3G19990.1entrez:821537
GeneID:821537GO:GO:0005829GO:GO:0009507GO:GO:0009570
Gramene:AT3G19990.1hmmpanther:PTHR14699hmmpanther:PTHR14699:SF3KEGG:ath:AT3G19990
OMA:IPPVFNGProteomes:UP000006548RefSeq:NP_188633.1TAIR:AT3G19990
UniGene:At.5941UniProt:Q501F4
Coordinates (TAIR10) chr3:+:6965671..6967102
Molecular Weight (calculated) 48418.10 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.22
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSSPSPN DAVLESARPF LRGELEKIDP KLPSLIAVLK SVGAGECWHK HGSFLDHLID IYKILKLWKA PESVCLCGLF HSAYSNSYVN LAIFDPSTGR
101: DVVRDHVGEA AESLIHLFCV VPRQTLIHDE LLFKYSDCEL VEHLDCSEVS LRNAKEKGIF DGDEEWRKKI NALVPENGVV VKHIKTGEEI VVSRRVVGVF
201: LLMTMADFSD QLFGFQDELF CNHDGRLEFR GNNVTALWPG NGKPGLWMNS NSRMGAIYSL IVREEEILME ERRRAFGSGF EVRKERDEDI DLVVPPVFSF
301: CTKVLDAKEQ IEAREMYWEV VSSDTSKEGY LERAEERLLG CIEKNPFVGE PHVLLSQVYL GKKRFKEAER EAEKGLLLLL QWGSPWDKRM SWEGWIAWVR
401: VLLMKSQDQS WPDVSWGILN LGLVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)