AT1G67780.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Zinc-finger domain of monoamine-oxidase A repressor R1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Zinc-finger domain of monoamine-oxidase A repressor R1 protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 protein (TAIR:AT1G67270.1); Has 462 Blast hits to 453 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 73; Plants - 215; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:25412816..25415530 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57263.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIEGEKEKP SKRTTNPGVR VVGGRIYDSS NGKTCHQCRQ KTMDFVASCK AMKKDKQCTI NFCHKCLINR YGENAEEVAK LDDWICPQCR GICNCSFCRK 101: KRGLNPTGIL AHKAKASGLA SVSMLLEVEG HDNFAYQKKP KLNDDSMEGS SGNSDSVSGT DVEVADVAKD KKKVVGKSKK ANATHKLKEE IQFEAQLPQG 201: ISLISVSGVV IPTEEAGNVF QLFEFCSAFG KALELKEGQA ETVVRELFSC GRNTRRQQYC SIIQLMIQLL DLISKDREMS LSLSVSDNWF TALGEILLQS 301: EVLSDEFPPE TFETGVAEYE KMDASRRLKL LNFVCDESLS TWAMRNCIKS QSTECKANNN EAKRKAAAAK EKEKQLKQKL QGDLAKAIMK KNGAPLSIEE 401: HNEILSQIRA EAKEAHDGMM EAKGITSGMT RICDARRTEP IMVEDNGLVL WKLNCYDEEP KFLLQDLGTF DGLCSHEKWL AFKPEQKPDI ENYISYKRRK 501: VMQTLKNTNV VA |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)