AT1G63210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription elongation factor Spt6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription elongation factor Spt6; FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: sperm cell, flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: global transcription factor group B1 (TAIR:AT1G65440.2); Has 3998 Blast hits to 3944 proteins in 1964 species: Archae - 20; Bacteria - 3376; Metazoa - 203; Fungi - 157; Plants - 65; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23443688..23447354 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 138140.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1197 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRRKKMKYKQ GTDSNALRYA NDVFGDPEEL LKLRKKDLKY NEKIERKLED EFEPMVLSEK YMTEKDDEIR KLDVPERMQI FEEAIGIVSL DDMSIQEESN 0101: WIYARLLQEQ GQGCLINKDD IVKFLEMFHV QKLEIPFIAM YRKEQCRSLL DSSDDDHDGS DFNLDKKLET KWHKVLWMIQ DLDRKWVLLR KRKTALFGYY 0201: TKRFEEETCM SDLNKSLFES VIKSLQAAET EREVDDVDSK FNLHFPHCEI DEGQYKRPNR KSQYSICSKF GIKEFANKFG YSAEQLGLAL SLEKVFVDEL 0301: EDAKKTPEEM ALNYECAMFG DSQAVLKGAR HMAAVEISCE PSIRKYVRGI FMENAVVSTS PTPDGNVVID SFHRFSAVKW LSEKPLRKFD GVQWLLIQKA 0401: EEEKLLQVTF KLPENQMNRI ISECSEHYLS VGVSKYAQLW NEQRKLILED AVHGFVLPSM EKEARSLLTS RAKTQLLSEY GQVLWNKVSS GPYRRNNNTS 0501: EEEAAPRVLA CCWGPGNPET TFVMLDSSGE LVDVLYSGSI GLRSRDVNDQ KRKKMDQDRF LKFIRDHQPD VLALAAVNLS CVRLKDEIYE AIFQMVEELP 0601: LNYVDDRIYD FPLVYADESL PRLYENSRIS SEQLPQQAGI VKRAVSLGRY LQNPLAMIST LCGPGRDILS WKLHSFQDFL DPDEKYEMVE QVMVDITNQV 0701: GIDINLAASH EWLFSPLQFV SGLGPRKAAS LQKSLVRAGS IFVRKELINH GIGKKVFVNA AGFLRIRRSG LACSSSQFID LLDDTRIHPE SYGLAQELAK 0801: DVYAHDTVRG DEDDAIEMAI EHVRDEPASL RKIVLDEYLR SKNQENKKET YSLIMRELSC GFQDWRSLFK EVDSDEEFYM ISGETKETIG EGRIVQATVK 0901: KVTSGKAKCV LDCGLPGILL KEDYSDDGRD IVDLSNKLCE GDIVTCKVKS ILKQRYHVLL VCKESEMRKH RNLGDVDDYY HEEKRNSVLI EKEKVPKEKK 1001: QFKSRMIVHP RFQNITAEQA TVYLSDKNIG ESIVRPSSRG LNHLTLMIKI SDNVYANKEI IEGEKENKDI VSLQRIGKTL KIGNETFEDL DEVMDRYVDP 1101: LVTHLMTMLN HRKFRTGTKS EIDDLLRVEK GVNPKMVVYS FGVSHEHPGS FILSYIRSAN PHHEYIGLYP KGFKFRKRMF GDLDKLAAYF KRHIDNQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)