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AT1G62220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62000.1); Has 131 Blast hits to 122 proteins in 40 species: Archae - 0; Bacteria - 73; Metazoa - 10; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EMBL:AC000375EMBL:BT002422EMBL:BT021993EMBL:CP002684
EnsemblPlants:AT1G62220EnsemblPlants:AT1G62220.1entrez:842518GeneID:842518
Genevisible:O04587Gramene:AT1G62220.1HOGENOM:HOG000113940InParanoid:O04587
KEGG:ath:AT1G62220OMA:ANAYENGPaxDb:O04587Pfam:O04587
PhylomeDB:O04587PIR:G96648PRO:PR:O04587ProteinModelPortal:O04587
Proteomes:UP000006548RefSeq:NP_176413.1STRING:3702.AT1G62220.1TAIR:AT1G62220
TMHMM:TMhelixUniGene:At.36289UniGene:At.74130UniProt:O04587
Coordinates (TAIR10) chr1:+:22988252..22988713
Molecular Weight (calculated) 15463.40 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.41
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MNATKFVVLL VISVLCAIVT ARHVEEVSKE TKLGTSLPKS TTKGIGAQLS AAGITSSSSD VYSSATGFNN PKGPDANAYE NGYTSTSGQV IAKGRKARVS
101: SASASTAKGD AKAAVTRKAA AARANGKVAS ASRVKGSSEK KKGKGKKGKG KKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)