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AT1G62060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62220.1); Has 386 Blast hits to 125 proteins in 33 species: Archae - 6; Bacteria - 295; Metazoa - 8; Fungi - 17; Plants - 46; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
EMBL:AC000375EMBL:AY075629EMBL:AY125570EMBL:CP002684
EnsemblPlants:AT1G62060EnsemblPlants:AT1G62060.1entrez:842502GeneID:842502
Genevisible:O04573Gramene:AT1G62060.1HOGENOM:HOG000113940InParanoid:O04573
iPTMnet:O04573KEGG:ath:AT1G62060OMA:CARQPEEPaxDb:O04573
Pfam:O04573PhylomeDB:O04573PIR:A96647PRIDE:O04573
PRO:PR:O04573Proteomes:UP000006548RefSeq:NP_176397.1STRING:3702.AT1G62060.1
TAIR:AT1G62060TMHMM:TMhelixUniGene:At.28204UniGene:At.74101
UniProt:O04573
Coordinates (TAIR10) chr1:-:22941795..22942247
Molecular Weight (calculated) 14969.90 Da
IEP (calculated) 11.13
GRAVY (calculated) -0.22
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MNATKFVVLL VIGILCAIVT ARQVEEVSKE TKLGTSLPKS TNKGIGAQLS AAGLTYSGSS VSSSASAFNN PKGPGASASE SGYTSTIGQV IAKGRKARVS
101: SASASAATGE AAAAVTRKAA AARAKGKVAS ASRVKGSSEK KKKDHKGKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)