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AT1G61670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G10980.1); Has 653 Blast hits to 651 proteins in 175 species: Archae - 0; Bacteria - 2; Metazoa - 278; Fungi - 148; Plants - 158; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1QeggNOG:KOG2568EMBL:AK117715EMBL:CP002684
EnsemblPlants:AT1G61670EnsemblPlants:AT1G61670.1entrez:842464GeneID:842464
GO:GO:0005794GO:GO:0016021Gramene:AT1G61670.1hmmpanther:PTHR21229
hmmpanther:PTHR21229:SF1HOGENOM:HOG000242452InterPro:IPR009637KEGG:ath:AT1G61670
OMA:LMTLYGFPANTHER:PTHR21229Pfam:PF06814PhylomeDB:Q8GYD0
Proteomes:UP000006548RefSeq:NP_176360.2STRING:3702.AT1G61670.1TAIR:AT1G61670
TMHMM:TMhelixUniGene:At.36397UniGene:At.43733UniProt:Q8GYD0
Coordinates (TAIR10) chr1:+:22770132..22772258
Molecular Weight (calculated) 57693.20 Da
IEP (calculated) 5.82
GRAVY (calculated) 0.17
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNRSLGFWA IGVLLIGSLI GATEGSIHEY NNEKFTAKFN ARFFHGGSEG LYASKSQDLN SSSSSDNSFK GKSFIRFDDV TFVRTKESAS KQNAMQSTSG
101: LVEAIILEVK DRDRIGGTFL KSEVICCTPE LADTGSCSLG EVIIKRESND VEWPRQIKTF FKGNKTEVNM SPETVVINKT GMYYLYFMIC DPELDGTRIK
201: GRTVWKNPDG YLPGKVAPLM NVFGFMSLAY ILLGLVWFVR FVQFWKDIIQ LHYHITLVIA LGMCEMAVRY FEYVNFNSTG MRPMDVTLWA VTFSSIKKTL
301: SRLLLLVVSM GYGVVKPTLG GITSRILLLG VIYFVATEAL ELVEHLGNIN DFSGKTMIVL VIPVALLDAC FILWIFSSLA RTLEKLQIKR NMAKLELYRN
401: FTNALAISVL LSIAWIGFEL YFNGTDPLIE LWRMAWIIPA FWNLLSYGLL AVICILWAPS NNPTRYSYLA ETGDEFEEEG ISLTGSGIKS TEDVERNELL
501: FGLPDDVEEG KRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)