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AT1G60000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 32490 Blast hits to 20923 proteins in 885 species: Archae - 20; Bacteria - 3265; Metazoa - 15733; Fungi - 4094; Plants - 5788; Viruses - 0; Other Eukaryotes - 3590 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC005966EMBL:AF348590
EMBL:AK316953EMBL:AY088142EMBL:CP002684EnsemblPlants:AT1G60000
EnsemblPlants:AT1G60000.1entrez:842294ExpressionAtlas:Q9ZUJ3Gene3D:3.30.70.330
GeneID:842294GO:GO:0000166GO:GO:0003676Gramene:AT1G60000.1
hmmpanther:PTHR24012HOGENOM:HOG000276232InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT1G60000OMA:IQDFANPPfam:PF00076Pfscan:PS50102
PhylomeDB:Q9ZUJ3PIR:C96624PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_176208.1SMART:SM00360SMR:Q9ZUJ3STRING:3702.AT1G60000.1
SUPFAM:SSF54928TAIR:AT1G60000UniGene:At.17057UniProt:Q9ZUJ3
Coordinates (TAIR10) chr1:-:22093678..22094540
Molecular Weight (calculated) 28499.60 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.26
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSVLLSC FKSHHQPNLL HGCNYSSNQT LLRFNFSTPK PLLISSRSCS RRFRVLSETI TVKLEEEEKD DGASAVLDPP AAVNTKLYFG NLPYNVDSAT
101: LAQIIQDFAN PELVEVLYNR DTGQSRGFAF VTMSNVEDCN IIIDNLDGTE YLGRALKVNF ADKPKPNKEP LYPETEHKLF VGNLSWTVTS ESLAGAFREC
201: GDVVGARVVF DGDTGRSRGY GFVCYSSKAE METALESLDG FELEGRAIRV NLAQGKKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)