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AT1G55475.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.786
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS1VeggNOG:ENOG4111CS5EMBL:AY056146EMBL:BT015912
EMBL:CP002684EnsemblPlants:AT1G55475EnsemblPlants:AT1G55475.1entrez:2745831
GeneID:2745831Gramene:AT1G55475.1hmmpanther:PTHR33401HOGENOM:HOG000005751
KEGG:ath:AT1G55475OMA:NCLKDSIPhylomeDB:Q940A5Proteomes:UP000006548
RefSeq:NP_974033.1TAIR:AT1G55475UniGene:At.26377UniProt:Q940A5
Coordinates (TAIR10) chr1:+:20711977..20712586
Molecular Weight (calculated) 13546.70 Da
IEP (calculated) 4.06
GRAVY (calculated) -0.66
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MINCLKDSIH VLMSVLLSTS DDDDDHEEIL EHVDGLTNAE DREEVDAKEE EGQIVGDTLT LKSSLRKVDS NSTEAEKREK KKVQWVDVIG KELAEIREFE
101: PSDEDDIDSD RGKTCVCIIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)