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AT1G55020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipoxygenase 1
Curator
Summary (TAIR10)
lipoxygenase, a defense gene conferring resistance Xanthomonas campestris
Computational
Description (TAIR10)
lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:27169BRENDA:1.13.11.58EC:1.13.11.58eggNOG:ENOG410IH0D
eggNOG:ENOG410YN4NEMBL:AC064840EMBL:AC069144EMBL:AY093104
EMBL:BT010358EMBL:CP002684EMBL:L04637EMBL:U01843
EnsemblPlants:AT1G55020EnsemblPlants:AT1G55020.1entrez:841944Gene3D:2.60.60.20
Gene3D:4.10.372.10GeneID:841944Genevisible:Q06327GO:GO:0009536
GO:GO:0009737GO:GO:0009753GO:GO:0010311GO:GO:0031408
GO:GO:0034440GO:GO:0046872GO:GO:0048364GO:GO:1990136
Gramene:AT1G55020.1gramene_pathway:1.13.11.12gramene_pathway:PWY-5410gramene_pathway:PWY-735
hmmpanther:PTHR11771hmmpanther:PTHR11771:SF48HOGENOM:HOG000230469InParanoid:Q06327
InterPro:IPR000907InterPro:IPR001024InterPro:IPR001246InterPro:IPR013819
InterPro:IPR020833InterPro:IPR020834InterPro:IPR027433KEGG:ath:AT1G55020
KO:K15718MINT:MINT-8068008OMA:NGDKFGAPANTHER:PTHR11771
PaxDb:Q06327Pfam:PF00305Pfam:PF01477Pfam:Q06327
Pfscan:PS50095Pfscan:PS51393PhylomeDB:Q06327PIR:JQ2267
PRIDE:Q06327PRINTS:PR00087PRINTS:PR00468PRO:PR:Q06327
PROSITE:PS00081PROSITE:PS00711PROSITE:PS50095PROSITE:PS51393
ProteinModelPortal:Q06327Proteomes:UP000006548Reactome:R-ATH-2142691Reactome:R-ATH-2142696
Reactome:R-ATH-2142700Reactome:R-ATH-2142712Reactome:R-ATH-2142770RefSeq:NP_175900.1
scanprosite:PS00081scanprosite:PS00711SMART:SM00308SMR:Q06327
STRING:3702.AT1G55020.1SUPFAM:SSF48484SUPFAM:SSF49723TAIR:AT1G55020
tair10-symbols:ATLOX1tair10-symbols:LOX1UniGene:At.19984UniGene:At.67309
UniPathway:UPA00382UniProt:Q06327
Coordinates (TAIR10) chr1:+:20525798..20530143
Molecular Weight (calculated) 98050.50 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.44
Length 859 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)