AT1G48840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.815 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF639) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT3G18350.1); Has 149 Blast hits to 146 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18061931..18064811 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77435.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||
| Length | 691 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSRTMDVLE GLVKDSSLKW LLGKQSSFDE EIEEIENSPS AGANWIPELS PVANVVIRRC SKILGVAVSE LQDSFKQEAS ESVKQPSMFP RNFLEYCCFR 101: ALALSVGVTG HLSDKSFRRL TFDMMVAWEV PSAASQTLLS VDEDPTVGLE AFSRIAPAVP IIADVIICEN LFGILTSVSN SVRLQFYVYD KYLYGLERAI 201: KKMKSQSESS LLSGVRSKGE KILELDGTVT TQPVLEHIGI STWPGRLILT DHSLYFEAIK VVSFDTPKRY SLSDDLKQVI KPELTGPWGT RLFDKAVSYK 301: SISLPEPVVM EFPELKGHTR RDYWLAIILE VLYVHRYIKK FKINSVAKDE AISKAVLGIL RVQAIQEVGL TNPVRYENLL PFNLCDQLPG GDRILETLAE 401: MSSSRVLDRT AKAKEGTLHS ISASDMVSQL GLVFGATSPK SRSSLVVGEV MVGDVNPLEK AVKQSRKNYE KVVLAQETVN GVKVDGIDTN VAVMKELLLP 501: ATEIGNWLLS LVYWEDPLKS FVFCLLSTFI IYRGWIGYVF AIATLFIAGF MVLTRYFSNR EKVMIELKVM APPPMNTMEQ LLAVQNAISQ LEQLIQDANI 601: VLLKFRALLL SLFPQASEKF AVAIVIAATM MALVPWNNLI LVVFLELFTR YSPPRRASTE RLMRRLKEWW FSIPAAPVLL EQSKDDNKKT K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)