AT1G48370.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : YELLOW STRIPE like 8 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana metal-nicotianamine transporter YSL4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
YELLOW STRIPE like 8 (YSL8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1797 Blast hits to 1745 proteins in 565 species: Archae - 19; Bacteria - 910; Metazoa - 0; Fungi - 269; Plants - 459; Viruses - 1; Other Eukaryotes - 139 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:17874560..17877256 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80113.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 724 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKGGLTPDR DRQIEEHELQ ETGISPDIER LKRNINATPY QREEEEEDRE EQEESVEGIF ESREVPSWKK QLTIRAFVVS FALSILFSFI VMKLNLTTGI 101: IPSLNVSAGL LGFFFVKTWT KMLHKSGLLK QPFTRQENTV IQTCVVASSG IAFSGGFGTY LFAMSHRIAD QSGDVARGVK DPSLGWMIAF LFVVSFLGLF 201: SVVPLRKIMI IDFKLPYPSG TATAHLINSF HTPQGAKLAK KQVRVLGKFF SFSFFWGFFQ WFFTAGENCG FNSFPTFGLR AYQYKFYFDF SATYVGVGMI 301: CPYIINISLL LGGILSWGLM WPLIETRKGD WFPSNVDSSS MNGLQAYKVF IAVATILGDG LYNFCKVLIR TFSGLISQIR GKAGSRSSLA HKEDPPASPA 401: SPLTPRISYD DQRRTRFFLK DQIPSWFAVG GYVVISAVST AILPHMFSQL RWYYIIVIYI FAPILAFCNA YGAGLTDWSL ASTYGKLAIF TIGAWAGSDH 501: GGLLAGLAAC GVMMNIVSTA SDLTQDFKTG YLTLSSPRAM FVSQVIGTAM GCLVSPCVFW LFYKAFDDLG LPNSEYPAPF ATVYRSMAKL GVEGVSSLPR 601: DCLMLCYVFF GVAILINLIK DCLGNRWGRF VPLPMAMAIP FFLGPYFAID MCVGSFILFV WERLDAPKAE AFATAVASGL ICGDGIWTLP SSVLAIAGVK 701: PPICMKFLSA ATNHRVDKFL QGSS |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)