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AT1G34270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.443
plasma membrane 0.400
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G35100.1); Has 1266 Blast hits to 1263 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 4; Plants - 1015; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
CAZy:GT47eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:AC007454
EMBL:AY054544EMBL:AY081684EMBL:CP002684EMBL:KJ138971
EnsemblPlants:AT1G34270EnsemblPlants:AT1G34270.1entrez:840327GeneID:840327
GO:GO:0016021GO:GO:0016740Gramene:AT1G34270.1hmmpanther:PTHR11062
hmmpanther:PTHR11062:SF60HOGENOM:HOG000238383InterPro:IPR004263KEGG:ath:AT1G34270
OMA:IVREKLWPfam:PF03016PhylomeDB:Q9XID1PIR:H86466
Proteomes:UP000006548RefSeq:NP_564443.1STRING:3702.AT1G34270.1TAIR:AT1G34270
TMHMM:TMhelixUniGene:At.26467UniProt:Q9XID1
Coordinates (TAIR10) chr1:-:12492571..12494514
Molecular Weight (calculated) 53888.50 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.32
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPKIASMAS TRPLCSIPSI FLSFSLLFVV SLLFFFSNSL ISNPNPSISH NTLQNGINVY VAELPRSLNY GLIDKYWSSS TPDSRIPSDP DHPTRKTHSP
101: DKYPPYPENP LIKQYSAEYW IMGDLETSPE KRIGSFAKRV FSESDADVVF VPFFATLSAE MELGNGKGSF RKKSGNEDYQ RQRQVLDFVK NTKAWKRSNG
201: RDHVFVLTDP VAMWHVREEI ALSILLVVDF GGWFRQDSKS SNGTSLPERI QHTQVSVIKD VIVPYTHLLP RLDLSQNQRR HSLLYFKGAK HRHRGGLIRE
301: KLWDLLVNEP GVVMEEGFPN ATGREQSIRG MRNSEFCLHP AGDTPTSCRL FDAIQSLCIP VIVSDTIELP FEGIIDYSEF SVFASVSDAL TPKWLANHLG
401: RFSEREKETL RSRIAKVQSV FVYDNGHADG IGPIEPNGAV NHIWKKVQQK VPMVKEAVIR ERRKPAGASV PLRCQCI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)