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AT1G33780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF179)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF179); LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT3G29240.2); Has 2552 Blast hits to 2552 proteins in 947 species: Archae - 0; Bacteria - 1880; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).
Protein Annotations
DNASU:840269eggNOG:COG1678eggNOG:ENOG410IKTJEMBL:AY062812
EMBL:AY081586EMBL:CP002684EnsemblPlants:AT1G33780EnsemblPlants:AT1G33780.1
entrez:840269GeneID:840269GO:GO:0009507Gramene:AT1G33780.1
hmmpanther:PTHR31984hmmpanther:PTHR31984:SF1HOGENOM:HOG000238547InterPro:IPR003774
KEGG:ath:AT1G33780OMA:MKSGAIRPfam:PF02622PhylomeDB:Q8W467
Proteomes:UP000006548RefSeq:NP_174638.2SMR:Q8W467STRING:3702.AT1G33780.1
SUPFAM:SSF143456TAIR:AT1G33780UniGene:At.15837UniProt:Q8W467
Coordinates (TAIR10) chr1:-:12244799..12246034
Molecular Weight (calculated) 36394.20 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.47
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLWTLQLKD VTIRNPIFSS SIPEKSSSFS RKLCELEFRF LNRKVSASPY RSLVVRATSK KSNDDSSSPG DASQENKPSN GNKSGDSAAP KSFGLNTDWR
101: EFRANLFMKE QEEKAEAEGH ESEPIGLKWA HPIPFPETGC VLVATEKLDG YRTFARTVVL LLRAGTRHPQ EGPFGVVINR PLHKNIKHMK STKTELATTF
201: SECSLYFGGP LEASMFLLKT GDKTKIPGFE EVMPGLNFGT RNSLDEAAVL VKKGVLKPQE FRFFVGYAGW QLDQLREEIE SDYWHVAACS SDLICGASSE
301: NLWEEILQLM GGQYSELSRK PKLDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)