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AT1G32240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.
Computational
Description (TAIR10)
KANADI 2 (KAN2); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G17695.1); Has 1778 Blast hits to 1772 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 21; Plants - 1618; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
BioGrid:25350eggNOG:ENOG410IY9FeggNOG:ENOG410YB3TEMBL:AB493491
EMBL:AC084110EMBL:AY048689EMBL:BT029211EMBL:CP002684
EnsemblPlants:AT1G32240EnsemblPlants:AT1G32240.1entrez:840116Gene3D:1.10.10.60
GeneID:840116Genevisible:Q9C616GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009944GO:GO:0030154
GO:GO:0044212GO:GO:0048440GO:GO:0048481Gramene:AT1G32240.1
hmmpanther:PTHR31496hmmpanther:PTHR31496:SF10HOGENOM:HOG000241649InParanoid:Q9C616
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057KEGG:ath:AT1G32240
OMA:SSMAKPDPaxDb:Q9C616Pfam:PF00249Pfam:Q9C616
PhylomeDB:Q9C616PRIDE:Q9C616PRO:PR:Q9C616ProteinModelPortal:Q9C616
Proteomes:UP000006548RefSeq:NP_564392.1SMR:Q9C616STRING:3702.AT1G32240.1
SUPFAM:SSF46689TAIR:AT1G32240tair10-symbols:KAN2TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.25340UniProt:Q9C616
Coordinates (TAIR10) chr1:-:11625882..11630355
Molecular Weight (calculated) 43842.90 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.89
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)