AT1G32240.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
KANADI 2 (KAN2); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G17695.1); Has 1778 Blast hits to 1772 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 21; Plants - 1618; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:11625882..11630355 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43842.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 388 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI 101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR 201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD 301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)