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AT1G31410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : putrescine-binding periplasmic protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
putrescine-binding periplasmic protein-related; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial periplasmic spermidine/putrescine-binding protein (InterPro:IPR001188), Bacterial extracellular solute-binding, family 1 (InterPro:IPR006059); Has 4685 Blast hits to 4685 proteins in 1552 species: Archae - 5; Bacteria - 4396; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0687eggNOG:ENOG410IKUSEMBL:BT015412EMBL:CP002684
EnsemblPlants:AT1G31410EnsemblPlants:AT1G31410.1entrez:840031GeneID:840031
GO:GO:0009941GO:GO:0015846GO:GO:0019808GO:GO:0042597
Gramene:AT1G31410.1hmmpanther:PTHR30222hmmpanther:PTHR30222:SF3InterPro:IPR001188
KEGG:ath:AT1G31410OMA:TYARACVPfam:PF13343PhylomeDB:Q66GJ0
PRINTS:PR00909Proteomes:UP000006548RefSeq:NP_174426.2SMR:Q66GJ0
STRING:3702.AT1G31410.1SUPFAM:SSF53850TAIR:AT1G31410UniGene:At.40347
UniProt:Q66GJ0
Coordinates (TAIR10) chr1:-:11247094..11249345
Molecular Weight (calculated) 58295.20 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.30
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAAIISVK PPASFYCGGN RRDGGRGITI ARVSRDERFH ERIVGLSAST VLFIGLSSLR VCSPASARIL PPPIVVTENE INTETVAGEE NLNEVEDEEK
101: LEADFEAYKS KVYSLTVPLK LVALRGSVPP SWIKEFMSSQ GKRVRLKTQF RGNLEEIFFD LSKPSKNGKK GAASTAAADM ISIGDSWLSF AIKEKLIEPM
201: KGIEDQDWYK GLSDKWKIYL RRNYAGEKAP DGETWAVPYR WGTMVIAYKK SKFQNYKLAP IEDWADLWRP ELAGRIAMVN SPREVVGAVL KYMRASYNTT
301: DLDSQVPGGR LAVEKNLASL MKQIRLFDSN NYLKAFNVGD VWVTVGWSSD VIPVAKRMSN VTVIVPKSGA TLWADLWAIP AVSDSGKEAE QRGGRVRGPS
401: PLINQWIEFC LQPARSLPFT REVIPGASPS ALDGPLVTEP EKTKKDRTKL DTNLVTGVPP PEILSKCEFL EPLPEATLSE YRLLIETVRK QSQRPGLVEK
501: LKDIVSIKVR GFRAKLDSEM NKNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)