AT1G28670.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Arabidopsis thaliana lipase | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ARAB-1; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28660.1); Has 3359 Blast hits to 3311 proteins in 183 species: Archae - 0; Bacteria - 261; Metazoa - 0; Fungi - 0; Plants - 3095; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:10074669..10076250 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42429.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.21 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 384 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSLKKLIS SFLLVLYSTT IIVASSESRC RRFKSIISFG DSIADTGNYL HLSDVNHLPQ SAFLPYGESF FHPPSGRASN GRLIIDFIAE FLGLPYVPPY 101: FGSQNVSFEQ GINFAVYGAT ALDRAFLLGK GIESDFTNVS LSVQLDTFKQ ILPNLCASST RDCKEMLGDS LILMGEIGGN DYNYPFFEGK SINEIKELVP 201: LIVKAISSAI VDLIDLGGKT FLVPGGFPTG CSAAYLTLFQ TVAEKDQDPL TGCYPLLNEF GEHHNEQLKT ELKRLQKFYP HVNIIYADYH NSLYRFYQEP 301: AKYGFKNKPL AACCGVGGKY NFTIGKECGY EGVNYCQNPS EYVNWDGYHL TEAAYQKMTE GILNGPYATP AFDWSCLGSG TVDT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)