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AT1G28090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotide adenylyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9340 Blast hits to 9332 proteins in 2600 species: Archae - 2; Bacteria - 6572; Metazoa - 129; Fungi - 227; Plants - 128; Viruses - 8; Other Eukaryotes - 2274 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0617eggNOG:KOG2159EMBL:CP002684EnsemblPlants:AT1G28090
EnsemblPlants:AT1G28090.1entrez:839702ExpressionAtlas:F4HUW0GeneID:839702
GO:GO:0003723GO:GO:0006396GO:GO:0016779Gramene:AT1G28090.1
hmmpanther:PTHR13734hmmpanther:PTHR13734:SF47InParanoid:F4HUW0InterPro:IPR002646
InterPro:IPR032828OMA:ANAMSKYPaxDb:F4HUW0Pfam:PF01743
Pfam:PF12627PhylomeDB:F4HUW0PRIDE:F4HUW0ProteinModelPortal:F4HUW0
Proteomes:UP000006548RefSeq:NP_174130.2SMR:F4HUW0STRING:3702.AT1G28090.1
SUPFAM:SSF81301SUPFAM:SSF81891TAIR:AT1G28090UniGene:At.40938
UniProt:F4HUW0
Coordinates (TAIR10) chr1:+:9795826..9798891
Molecular Weight (calculated) 61150.00 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.23
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNKLSSMAY GSFGVSSKAL VYCRPCYGSI RDLPFSLRTS TIGHCGCVGA IAAPRNVVKP RKEESRDFSG ARGSNKDKSM PWKKLDANEF GIQRSMIPDS
101: TRMVLNKLKK KGFQVYLVGG CVRDLILDRI PKDFDVITTA ELKEVRKVFP GCQIVGRRFP ICHVYVDDII IEVSSFSTSA RTGKAPNKSF RRPAGCDERD
201: YIRWKNCLQR DFTVNGLMFD PSENVVYDYI GGVEDLRNSK VRTVSAANLS FVEDTARILR AIRIAARLGF SLTKDVAISV KELSSSLLRL DPSRIRMEIN
301: YMLAYGSAEA SLRLLWRFGL MEILLPIQAS YLVSQGFRRR DGRSNMLLSL FRNLDRLVAP DRPCSEFLWI GILAFHKALV DQPRDPTVVA SFCLAIYSEV
401: SLSEAIAIAR SNSKQHNSHF QELSSPEKDT ADSESKISQQ VIKLAESIRS AARKLNNRDY IANAMSKYPQ APGSDMVFLS RLMLERVEKM FGNVRRKGNQ
501: ERDDVPSLER RINYKSLALG DFHETRRVFA RIVFDTIYPL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)