AT1G27600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 684 Blast hits to 682 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9604083..9605881 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45189.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASIRRTLSP MYHDRSHENG GSHKGFTIGG SSSKHNSSQF LSYLTKLLGV TSDPKSSRRG PWRRPFYQFL VFFLLGFVLG LTPFGKMEDV NGSDRFSFEI 101: KQPYVEERLE NRKREEAAVD AVSFVAETEN GKKEVNFVPK KLLIVVTPTY NRAMQAYYLN RVAQTLRLVE SPVLWIVVEG NVASFETSEI LRKTGVMYRH 201: LVCKRNMTSI KDRGVHQRNT ALEHIELHKL DGIVYFADDD NIYSLELFQS LRQISRFGTW PVAMLAQSKN KAILEGPVCN GSQVIGWHTN EKSKRLRRFH 301: VDMSGFAFNS TILWDPKRWR RPFSHPTRQL DTVKEGFQET SFIEQVVADE SEMEGVPPAC SSILNWHLHL DALDVPYPQG WAIQKNLQAL ITMK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)