AT1G27180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.499 cytosol 0.476 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class), putative | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptors;ATP binding (TAIR:AT1G27170.1); Has 83534 Blast hits to 33450 proteins in 1183 species: Archae - 68; Bacteria - 4700; Metazoa - 16188; Fungi - 1127; Plants - 56869; Viruses - 12; Other Eukaryotes - 4570 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9439859..9445818 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 176117.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1556 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MMKTGAVVSN PRSRVKWDAF LSFQRDTSHN FTDRLYEALV KEELRVWNDD LERVDHDHDH ELRPSLVEAI EDSVAFVVVL SPNYANSHLR LEELAKLCDL 0101: KCLMVPIFYK VEPREVKEQN GPFEKDFEEH SKRFGEEKIQ RWKGAMTTVG NISGFICGYE IQLEMETGVV PNRLKYSVFL SFRGFDTRTN FCERLYIALN 0201: EKQNVRVFRD NEGMEKGDKI DPSLFEAIED SAASVIILST NYANSSWCLD ELALLCDLRS SLKRPMIPIF YGVNPEDVRK QSGEFRKDFE EKAKSFDEET 0301: IQRWKRAMNL VGNIPGYVCT AKTVGDDNEG INREKVDDMI DLVVKKVVAA VRNRPEIVAD YTVGLESPIK DLMKLFNTES SSGIQVMGLY GMGGIGKTTL 0401: AKAFYNKIIV NFNRHRVFIE SVRGKSSDQD GLVNLQKTLI KELFRLVPEI EDVSIGLEKI KENVHEKKII VVLDDVDHID QVNALVGETS WYGEGSLIVI 0501: TTRDSEILSK LSVNQQYEVK CLTEPQALKL FSFYSLRKEK PPTQGLLELS KKIAEVTGLL PLAVKVFGSH FYDKDENEWQ VELEKLKTQQ DKLHGVLALS 0601: FKSLDEEEKK IFLDIACLFL KMDITKEEVV DILKGCGLNA EAALRVLIQK SLLTILTDDT LWMHDQIRDM GRQMVHKESS DDPEMRSRLW DRGEIMNVLD 0701: YMKGTSSIRG IVLDFNKKFA RDHTADEIFS SNLRNNPGIY SVFNYLKNKL VRFPAEEKPK RSEITIPVES FAPMKKLRLL QINNVELEGD LKLLPSELKW 0801: IQWKGFPLEN LPPDILSRQL GVLDLSESGV RRVKTLPRKR GDENLKVVNL RGCHGLEAIP DLSNHNALEK LVLERCNLLV KVPRSVGNLG KLLQLDLRRC 0901: SSLSEFLGDV SGLKCLEKFF LSGCSNLSVL PENIGSMPCL KELLLDGTAI SNLPYSIFRL QKLEKLSLMG CRSIEELPSC VGYLTSLEDL YLDDTALRNL 1001: PSSIGDLKNL QKLHLMRCTS LSTIPETINK LMSLKELFIN GSAVEELPIE TGSLLCLTDL SAGDCKFLKQ VPSSIGGLNS LLQLQLDSTP IEALPEEIGD 1101: LHFIRQLDLR NCKSLKALPK TIGKMDTLYS LNLVGSNIEE LPEEFGKLEN LVELRMNNCK MLKRLPKSFG DLKSLHRLYM QETLVAELPE SFGNLSNLMV 1201: LEMLKKPLFR ISESNVPGTS EEPRFVEVPN SFSKLLKLEE LDACSWRISG KIPDDLEKLS CLMKLNLGNN YFHSLPSSLV KLSNLQELSL RDCRELKRLP 1301: PLPCKLEQLN LANCFSLESV SDLSELTILT DLNLTNCAKV VDIPGLEHLT ALKRLYMTGC NSNYSLAVKK RLSKASLKMM RNLSLPGNRV PDWFSQGPVT 1401: FSAQPNRELR GVIIAVVVAL NDETEDDDYQ LPDVMEVQAQ IHKLDHHKCT NTLHLSGVPR TNNDQLHICR YSAFHPLVTM LKDGYTIQVI KRNPPIKQGV 1501: ELKMHGIHLV YEGDDDLEGR ENTLPEAQQT VSQKLANFFS SFEEGEASAK GDSTVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)