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AT1G25240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.936
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS/GAT family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS/GAT family protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT1G68110.1); Has 471 Blast hits to 436 proteins in 54 species: Archae - 1; Bacteria - 2; Metazoa - 90; Fungi - 7; Plants - 370; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ90eggNOG:KOG0251EMBL:AC079374EMBL:CP002684
EnsemblPlants:AT1G25240EnsemblPlants:AT1G25240.1entrez:839107Gene3D:1.20.58.150
Gene3D:1.25.40.90GeneID:839107Genevisible:Q9FRH3GO:GO:0005545
GO:GO:0005794GO:GO:0005905GO:GO:0006897GO:GO:0030136
GO:GO:0048268Gramene:AT1G25240.1hmmpanther:PTHR22951hmmpanther:PTHR22951:SF19
HOGENOM:HOG000242855InParanoid:Q9FRH3InterPro:IPR008942InterPro:IPR011417
InterPro:IPR013809InterPro:IPR014712KEGG:ath:AT1G25240OMA:RICNGIA
PaxDb:Q9FRH3Pfam:PF07651Pfam:Q9FRH3Pfscan:PS50942
PhylomeDB:Q9FRH3PIR:A86382PRO:PR:Q9FRH3PROSITE:PS50942
ProteinModelPortal:Q9FRH3Proteomes:UP000006548RefSeq:NP_173895.1SMART:SM00273
STRING:3702.AT1G25240.1SUPFAM:SSF48464SUPFAM:SSF89009TAIR:AT1G25240
UniGene:At.41370UniProt:Q9FRH3
Coordinates (TAIR10) chr1:+:8845231..8846361
Molecular Weight (calculated) 43411.60 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.23
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLWKRASGA LKDRKTLFTI GFSRKTSFRN PDLDSAIIHA TSHDDSSVDY HNAHRVYKWI RSSPANLKPL VHALSSRVNR TRSWIVALKA LMLVHGVLCC
101: KVTSLQEIRR LPFDLSDFSD GHSRPSKTWG FNAFIRAYFS FLDQYSFFLS DQIRRRHKKP QLDSVNQELE RIEKLQSLLH MLLQIRPMAD NMKKTLILEA
201: MDCVVIEIFD IYGRICSAIA KLLIKIHPAA GKAEAVIALK IVKKATSQGE DLALYFEFCK EFGVSNAHDI PKFVTIPEED IKAIEKVING VEEEEVKKKE
301: DEVEEEKSII LVERPELQTI ITDKWEIFED DFCFTCKDIK ETDQHRKFNM DPSPLPLIVI DEPVYFTHTL PDLITF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)