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AT1G22990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AF000657EMBL:AF370526
EMBL:AF446887EMBL:AY052659EMBL:AY072474EMBL:CP002684
EMBL:U64910EnsemblPlants:AT1G22990EnsemblPlants:AT1G22990.1entrez:838907
GeneID:838907GO:GO:0005737GO:GO:0016020GO:GO:0030001
GO:GO:0046872GO:GO:0046914GO:GO:0046916Gramene:AT1G22990.1
hmmpanther:PTHR22814hmmpanther:PTHR22814:SF47HOGENOM:HOG000234967IntAct:Q93VP2
InterPro:IPR006121KEGG:ath:AT1G22990OMA:FSNHFYVPaxDb:Q93VP2
Pfam:PF00403Pfscan:PS50846PhylomeDB:Q93VP2PROSITE:PS50846
ProteinModelPortal:Q93VP2Proteomes:UP000006548RefSeq:NP_173712.1SMR:Q93VP2
STRING:3702.AT1G22990.1SUPFAM:SSF55008TAIR:AT1G22990tair10-symbols:HIPP22
UniGene:At.20068UniProt:Q93VP2
Coordinates (TAIR10) chr1:+:8139221..8140045
Molecular Weight (calculated) 17107.80 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.57
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQT VNIKVKIDCD GCERKIKNAV SSIKGAKSVE VNRKMHKVTV SGYVDPKKVL KTVQSTGKKK AELWPYVPYT
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)