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AT1G22550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22570.1); Has 7743 Blast hits to 7641 proteins in 1463 species: Archae - 0; Bacteria - 4037; Metazoa - 494; Fungi - 461; Plants - 2187; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).
Protein Annotations
BioGrid:24100eggNOG:COG3104eggNOG:KOG1237EMBL:AC006551
EMBL:AK227516EMBL:BT004638EMBL:CP002684EnsemblPlants:AT1G22550
EnsemblPlants:AT1G22550.1entrez:838861GeneID:838861Genevisible:Q9SK96
GO:GO:0005215GO:GO:0006857GO:GO:0016021Gramene:AT1G22550.1
hmmpanther:PTHR11654hmmpanther:PTHR11654:SF94HOGENOM:HOG000237400InParanoid:Q9SK96
InterPro:IPR000109InterPro:IPR018456InterPro:IPR020846KEGG:ath:AT1G22550
OMA:DATIPMSPANTHER:PTHR11654PaxDb:Q9SK96Pfam:PF00854
Pfam:Q9SK96PhylomeDB:Q9SK96PIR:G86358PRIDE:Q9SK96
PRO:PR:Q9SK96PROSITE:PS01022ProteinModelPortal:Q9SK96Proteomes:UP000006548
RefSeq:NP_173671.1scanprosite:PS01022SMR:Q9SK96STRING:3702.AT1G22550.1
SUPFAM:SSF103473TAIR:AT1G22550TMHMM:TMhelixUniGene:At.41594
UniProt:Q9SK96
Coordinates (TAIR10) chr1:-:7966608..7968552
Molecular Weight (calculated) 62171.10 Da
IEP (calculated) 9.36
GRAVY (calculated) 0.40
Length 564 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIAEEEAAL IEDSVSDSVD HRGLPAGKSS TGGWRSAWYI IGVEVGERFA YFGIGSNLIT YLTGPLGQST ATAAVNVNTW SGTASILPVL GAFIADAYLG
101: RYRTIVVASL IYILGLGLLT LSSILILMGL SEQRQHNRNA SAKPFFWVNI LFFCSLYLVA IGQGGHKPCV QAFGADQFDV GDPKERISRG SFFNWWFLSL
201: SAGITLSIIV VVYVQDNVNW ALGFGIPCLF MVMALALFLF GRKTYRYPRG DREGKNNAFA RIGRVFLVAF KNRKLKLTHS GQLEVGSYKK CKGQLEFLAK
301: ALLPGEGGVE PCSSRDVEDA MALVRLIPIW ITSVVSTIPY AQYATFFTKQ GVTVDRKILP GFEIPPASFQ ALIGLSIFIS VPTYERVFLP LARLITKKPS
401: GITMLQRIGA GMVLSSLNMV VAALVEMKRL ETAKEHGLVD RPDATIPMSI WWFVPQYLLL GMIDVFSLVG TQEFFYDQVP TELRSIGLAL SLSAMGLASF
501: LSGFLITVIN WATGKNGGDS WFNTNLNRAH VDYFYWLLAA FTAIGFLAFL LLSRLYVYRR VDQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)