AT1G22550.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.993 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22570.1); Has 7743 Blast hits to 7641 proteins in 1463 species: Archae - 0; Bacteria - 4037; Metazoa - 494; Fungi - 461; Plants - 2187; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:7966608..7968552 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62171.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIAEEEAAL IEDSVSDSVD HRGLPAGKSS TGGWRSAWYI IGVEVGERFA YFGIGSNLIT YLTGPLGQST ATAAVNVNTW SGTASILPVL GAFIADAYLG 101: RYRTIVVASL IYILGLGLLT LSSILILMGL SEQRQHNRNA SAKPFFWVNI LFFCSLYLVA IGQGGHKPCV QAFGADQFDV GDPKERISRG SFFNWWFLSL 201: SAGITLSIIV VVYVQDNVNW ALGFGIPCLF MVMALALFLF GRKTYRYPRG DREGKNNAFA RIGRVFLVAF KNRKLKLTHS GQLEVGSYKK CKGQLEFLAK 301: ALLPGEGGVE PCSSRDVEDA MALVRLIPIW ITSVVSTIPY AQYATFFTKQ GVTVDRKILP GFEIPPASFQ ALIGLSIFIS VPTYERVFLP LARLITKKPS 401: GITMLQRIGA GMVLSSLNMV VAALVEMKRL ETAKEHGLVD RPDATIPMSI WWFVPQYLLL GMIDVFSLVG TQEFFYDQVP TELRSIGLAL SLSAMGLASF 501: LSGFLITVIN WATGKNGGDS WFNTNLNRAH VDYFYWLLAA FTAIGFLAFL LLSRLYVYRR VDQV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)