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AT1G22220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.793
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78100.1); Has 155 Blast hits to 154 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24066eggNOG:ENOG410II98eggNOG:ENOG4111CQEEMBL:AC073942
EMBL:AK176237EMBL:BT012651EMBL:CP002684EnsemblPlants:AT1G22220
EnsemblPlants:AT1G22220.1entrez:838827GeneID:838827GO:GO:0009506
Gramene:AT1G22220.1hmmpanther:PTHR31215hmmpanther:PTHR31215:SF6HOGENOM:HOG000238387
InParanoid:Q9LM18InterPro:IPR001810KEGG:ath:AT1G22220ncoils:Coil
OMA:LKCKKNAPaxDb:Q9LM18Pfam:Q9LM18PhylomeDB:Q9LM18
PIR:H86354PRIDE:Q9LM18PRO:PR:Q9LM18ProteinModelPortal:Q9LM18
Proteomes:UP000006548RefSeq:NP_173641.1STRING:3702.AT1G22220.1SUPFAM:SSF81383
TAIR:AT1G22220UniGene:At.49903UniProt:Q9LM18
Coordinates (TAIR10) chr1:+:7846694..7847638
Molecular Weight (calculated) 34500.90 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.02
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)