AT1G22230.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046; Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes - 842 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:7850093..7851037 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 35521.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.92 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||
| Length | 314 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKGGGGKSS GYSADLMVCF PSRAHLSLPS KSISSPSSSF NRRQNAPHHR RSISKLSSSG GGVRQNRGGG REVVEEPTSP KVTCAGQIKV RSSKRDGGGK 101: NWQSLMAEIE KIHRSKSESK FFGIKRDVMG FLTCLRDFDF RCFGAFPPVD IISDDEEEDE EEEEEDEEED EDESSGTVFS KWLMVLHEKQ NNEECVDGKE 201: NVFSDVETAV PPPNALLLMR CRSAPVKNWS EEKKEETEEG DNRVKQSGEE EEEEKDRVGN KKDLRSLMEE EKKMNLVVMN YDTNYYKLSN DIAKETWVVG 301: GIQDPLFRSR SWKK |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)